From 0527e27f64c069b4c69fef9b6037839964ffc5c2 Mon Sep 17 00:00:00 2001
From: Scott R Charlton <charlton@usgs.gov>
Date: Thu, 15 Apr 2010 06:47:05 +0000
Subject: [PATCH] working on autotools

git-svn-id: svn://136.177.114.72/svn_GW/IPhreeqc/trunk@4260 1feff8c3-07ed-0310-ac33-dd36852eb9cd
---
 Makefile.am | 87 +++++++++++++++++++++++++++++++++++++++++++++++------
 1 file changed, 77 insertions(+), 10 deletions(-)

diff --git a/Makefile.am b/Makefile.am
index 48922563..043f31ad 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -1,85 +1,152 @@
+AM_CPPFLAGS=-I$(top_srcdir)/include -I$(top_srcdir)/src -I$(top_srcdir)/src/phreeqcpp -I$(top_srcdir)/src/phreeqcpp/cxx -DSWIG_SHARED_OBJ -DPHREEQC_CPP -DPHREEQC_CLASS -DUSE_PHRQ_ALLOC
+
 lib_LTLIBRARIES=libiphreeqc.la
 
 # library sources
-libiphreeqc_la_SOURCES= \
+libiphreeqc_la_SOURCES=\
+CVar.hxx\
+Debug.h\
+ErrorReporter.hxx\
+fwrap.cpp\
+fwrap.h\
 fwrap2.cpp\
 fwrap3.cpp\
-fwrap.cpp\
 IPhreeqc.cpp\
+IPhreeqcF.F\
 IPhreeqcLib.cpp\
 SelectedOutput.cpp\
+SelectedOutput.hxx\
 Var.c\
-IPhreeqcF.F\
+phreeqcpp/char_star.h\
 phreeqcpp/cxxKinetics.cxx\
+phreeqcpp/cxxKinetics.h\
 phreeqcpp/cxxMix.cxx\
+phreeqcpp/cxxMix.h\
+phreeqcpp/Dictionary.h\
 phreeqcpp/dumper.cpp\
+phreeqcpp/dumper.h\
 phreeqcpp/Exchange.cxx\
+phreeqcpp/Exchange.h\
 phreeqcpp/ExchComp.cxx\
+phreeqcpp/ExchComp.h\
 phreeqcpp/GasPhase.cxx\
-phreeqcpp/ISolutionComp.cxx\
+phreeqcpp/GasPhase.h\
 phreeqcpp/ISolution.cxx\
+phreeqcpp/ISolution.h\
+phreeqcpp/ISolutionComp.cxx\
+phreeqcpp/ISolutionComp.h\
 phreeqcpp/KineticsComp.cxx\
+phreeqcpp/KineticsComp.h\
 phreeqcpp/NameDouble.cxx\
+phreeqcpp/NameDouble.h\
 phreeqcpp/NumKeyword.cxx\
+phreeqcpp/NumKeyword.h\
 phreeqcpp/Parser.cxx\
+phreeqcpp/Parser.h\
 phreeqcpp/Phreeqc.cpp\
-phreeqcpp/PPassemblageComp.cxx\
+phreeqcpp/Phreeqc.h\
+phreeqcpp/Phreeqc_class.h\
 phreeqcpp/PPassemblage.cxx\
+phreeqcpp/PPassemblage.h\
+phreeqcpp/PPassemblageComp.cxx\
+phreeqcpp/PPassemblageComp.h\
 phreeqcpp/Reaction.cxx\
+phreeqcpp/Reaction.h\
 phreeqcpp/ReadClass.cxx\
 phreeqcpp/runner.cpp\
+phreeqcpp/runner.h\
+phreeqcpp/SAXPhreeqc.h\
+phreeqcpp/SaxPhreeqcHandlers.h\
 phreeqcpp/Solution.cxx\
+phreeqcpp/Solution.h\
 phreeqcpp/SolutionIsotope.cxx\
+phreeqcpp/SolutionIsotope.h\
 phreeqcpp/SolutionIsotopeList.cxx\
+phreeqcpp/SolutionIsotopeList.h\
 phreeqcpp/SSassemblage.cxx\
+phreeqcpp/SSassemblage.h\
 phreeqcpp/SSassemblageSS.cxx\
+phreeqcpp/SSassemblageSS.h\
 phreeqcpp/StorageBin.cxx\
+phreeqcpp/StorageBin.h\
 phreeqcpp/StorageBinList.cpp\
-phreeqcpp/SurfaceCharge.cxx\
-phreeqcpp/SurfaceComp.cxx\
+phreeqcpp/StorageBinList.h\
 phreeqcpp/Surface.cxx\
+phreeqcpp/Surface.h\
+phreeqcpp/SurfaceCharge.cxx\
+phreeqcpp/SurfaceCharge.h\
+phreeqcpp/SurfaceComp.cxx\
+phreeqcpp/SurfaceComp.h\
 phreeqcpp/System.cxx\
+phreeqcpp/System.h\
 phreeqcpp/Temperature.cxx\
+phreeqcpp/Temperature.h\
 phreeqcpp/Utils.cxx\
+phreeqcpp/Utils.h\
 phreeqcpp/cxx/advection.cxx\
 phreeqcpp/cxx/basic.cxx\
+phreeqcpp/cxx/basic.h\
 phreeqcpp/cxx/basicsubs.cxx\
 phreeqcpp/cxx/cl1.cxx\
 phreeqcpp/cxx/cvdense.cxx\
+phreeqcpp/cxx/cvdense.h\
 phreeqcpp/cxx/cvode.cxx\
+phreeqcpp/cxx/cvode.h\
 phreeqcpp/cxx/dense.cxx\
+phreeqcpp/cxx/dense.h\
 phreeqcpp/cxx/dw.cxx\
+phreeqcpp/cxx/global.h\
+phreeqcpp/cxx/global_structures.h\
 phreeqcpp/cxx/input.cxx\
+phreeqcpp/cxx/input.h\
 phreeqcpp/cxx/integrate.cxx\
 phreeqcpp/cxx/inverse.cxx\
 phreeqcpp/cxx/isotopes.cxx\
 phreeqcpp/cxx/kinetics.cxx\
+phreeqcpp/cxx/kinetics.h\
 phreeqcpp/cxx/mainsubs.cxx\
 phreeqcpp/cxx/model.cxx\
 phreeqcpp/cxx/nvector.cxx\
+phreeqcpp/cxx/nvector.h\
 phreeqcpp/cxx/nvector_serial.cxx\
+phreeqcpp/cxx/nvector_serial.h\
 phreeqcpp/cxx/output.cxx\
+phreeqcpp/cxx/output.h\
+phreeqcpp/cxx/p2c.h\
 phreeqcpp/cxx/p2clib.cxx\
 phreeqcpp/cxx/parse.cxx\
 phreeqcpp/cxx/phqalloc.cxx\
+phreeqcpp/cxx/phqalloc.h\
 phreeqcpp/cxx/phreeqc_files.cxx\
+phreeqcpp/cxx/phrqproto.h\
+phreeqcpp/cxx/phrqtype.h\
 phreeqcpp/cxx/pitzer.cxx\
+phreeqcpp/cxx/pitzer.h\
 phreeqcpp/cxx/pitzer_structures.cxx\
+phreeqcpp/cxx/pitzer_structures.h\
 phreeqcpp/cxx/prep.cxx\
 phreeqcpp/cxx/print.cxx\
 phreeqcpp/cxx/read.cxx\
 phreeqcpp/cxx/readtr.cxx\
 phreeqcpp/cxx/sit.cxx\
 phreeqcpp/cxx/smalldense.cxx\
+phreeqcpp/cxx/smalldense.h\
 phreeqcpp/cxx/spread.cxx\
 phreeqcpp/cxx/step.cxx\
 phreeqcpp/cxx/structures.cxx\
 phreeqcpp/cxx/sundialsmath.cxx\
+phreeqcpp/cxx/sundialsmath.h\
+phreeqcpp/cxx/sundialstypes.h\
 phreeqcpp/cxx/tally.cxx\
 phreeqcpp/cxx/tidy.cxx\
 phreeqcpp/cxx/transport.cxx\
 phreeqcpp/cxx/utilities.cxx
 
-AM_CPPFLAGS = -I../include -I../src -I../src/phreeqcpp -I../src/phreeqcpp/cxx -DSWIG_SHARED_OBJ -DPHREEQC_CPP -DPHREEQC_CLASS -DUSE_PHRQ_ALLOC
-
-
+include_HEADERS=\
+$(top_srcdir)/include/IPhreeqc.h\
+$(top_srcdir)/include/IPhreeqcCallbacks.h\
+$(top_srcdir)/include/IPhreeqc.f90.inc\
+$(top_srcdir)/include/IPhreeqc.f.inc\
+$(top_srcdir)/include/IPhreeqc.h\
+$(top_srcdir)/include/IPhreeqc.hpp\
+$(top_srcdir)/include/Var.h