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[iphreeqc] Added core10.dat, frezchem.dat, and Tipping_Hurley.dat to R distribution
This commit is contained in:
Scott R Charlton
parent
108fe635ec
commit
1f074edce7
@ -18,14 +18,17 @@ VERSION ?= 1.0
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DBS = \
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Amm.ascii \
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ColdChem.ascii \
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core10.ascii \
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ex15.ascii \
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frezchem.dat \
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iso.ascii \
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llnl.ascii \
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minteq.ascii \
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minteq.v4.ascii \
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phreeqc.ascii \
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pitzer.ascii \
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sit.ascii \
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phreeqc.ascii \
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Tipping_Hurley.ascii \
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wateq4f.ascii
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EXS = \
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@ -10,16 +10,19 @@
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##phreeqc.dat.string <- paste(scan("../database/phreeqc.dat", what="", sep="\n"), collapse="\n")
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##wateq4f.dat.string <- paste(scan("../database/wateq4f.dat", what="", sep="\n"), collapse="\n")
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# lists
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Amm.dat <- scan("Amm.ascii", what="", sep="\n")
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ColdChem.dat <- scan("ColdChem.ascii", what="", sep="\n")
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ex15.dat <- scan("ex15.ascii", what="", sep="\n")
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iso.dat <- scan("iso.ascii", what="", sep="\n")
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llnl.dat <- scan("llnl.ascii", what="", sep="\n")
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minteq.dat <- scan("minteq.ascii", what="", sep="\n")
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minteq.v4.dat <- scan("minteq.v4.ascii", what="", sep="\n")
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pitzer.dat <- scan("pitzer.ascii", what="", sep="\n")
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sit.dat <- scan("sit.ascii", what="", sep="\n")
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phreeqc.dat <- scan("phreeqc.ascii", what="", sep="\n")
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wateq4f.dat <- scan("wateq4f.ascii", what="", sep="\n")
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Amm.dat <- scan("Amm.ascii", what="", sep="\n")
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ColdChem.dat <- scan("ColdChem.ascii", what="", sep="\n")
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core10.dat <- scan("core10.ascii", what="", sep="\n")
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ex15.dat <- scan("ex15.ascii", what="", sep="\n")
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frezchem.dat <- scan("frezchem.ascii", what="", sep="\n")
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iso.dat <- scan("iso.ascii", what="", sep="\n")
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llnl.dat <- scan("llnl.ascii", what="", sep="\n")
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minteq.dat <- scan("minteq.ascii", what="", sep="\n")
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minteq.v4.dat <- scan("minteq.v4.ascii", what="", sep="\n")
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pitzer.dat <- scan("pitzer.ascii", what="", sep="\n")
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sit.dat <- scan("sit.ascii", what="", sep="\n")
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Tipping_Hurley.dat <- scan("Tipping_Hurley.ascii", what="", sep="\n")
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phreeqc.dat <- scan("phreeqc.ascii", what="", sep="\n")
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wateq4f.dat <- scan("wateq4f.ascii", what="", sep="\n")
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save(list = ls(all = TRUE), file = "phreeqc/data/databases.rda", compress = "xz")
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rm(list = ls(all = TRUE))
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@ -1388,7 +1388,7 @@ function(nuser, value) {
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage phreeqc.dat # phrLoadDatabaseString(phreeqc.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1403,7 +1403,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage ex15.dat # phrLoadDatabaseString(ex15.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1419,7 +1419,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage Amm.dat # phrLoadDatabaseString(Amm.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1434,7 +1434,53 @@ NULL
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##' @family Databases
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage ColdChem.dat # phrLoadDatabaseString(ColdChem.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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##' @name core10.dat
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##' @title The core10.dat database
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##' @description core10.dat is a database derived from phreeqc.dat and
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##' llnl.dat, with careful data checking, use of SUPCRT for temperature
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##' dependence, and addition of molar volumes for pressure dependence.
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##' Contributed by Marc Neveu. The database has been reformatted for use by
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##' \code{\link{phrLoadDatabaseString}}.
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##' @docType data
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##' @family Databases
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##' @references \url{https://dx.doi.org/10.1016/j.gca.2017.06.023}
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##' @source \url{https://github.com/MarcNeveu/IcyDwarf/blob/master/IcyDwarf/PHREEQC-3.1.2/core10.dat}
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##' @usage core10.dat # phrLoadDatabaseString(core10.dat)
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##' @keywords dataset
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NULL
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##' @name Tipping_Hurley.dat
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##' @title The Tipping_Hurley.dat database
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##' @description Tipping_Hurley.dat is a database for organic-ligand
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##' binding approximating WHAM by Tipping and Hurley.
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##' \code{\link{phrLoadDatabaseString}}.
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##' @docType data
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##' @family Databases
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##' @usage Tipping_Hurley.dat # phrLoadDatabaseString(Tipping_Hurley.dat)
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##' @keywords dataset
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NULL
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##' @name frezchem.dat
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##' @title The frezchem.dat database
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##' @description frezchem.dat is a database from Jonathon Toner and the
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##' developers for the frezchem code (Toner and Sletten (2013), Marion
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##' and coworkers). Frezchem is a Pitzer model for temperatures of 0 C
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##' and below.
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##' \code{\link{phrLoadDatabaseString}}.
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##' @docType data
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##' @family Databases
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##' @references \url{http://www.dri.edu/frezchem}
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##' @usage frezchem.dat # phrLoadDatabaseString(frezchem.dat)
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##' @keywords dataset
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NULL
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@ -1448,7 +1494,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage wateq4f.dat # phrLoadDatabaseString(wateq4f.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1463,7 +1509,7 @@ NULL
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##' @family Databases
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @usage llnl.dat # phrLoadDatabaseString(llnl.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1478,7 +1524,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage minteq.dat # phrLoadDatabaseString(minteq.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1493,7 +1539,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage minteq.v4.dat # phrLoadDatabaseString(minteq.v4.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1508,7 +1554,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage pitzer.dat # phrLoadDatabaseString(pitzer.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1524,7 +1570,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage sit.dat # phrLoadDatabaseString(sit.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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@ -1540,7 +1586,7 @@ NULL
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##' @references \url{http://pubs.usgs.gov/tm/06/a43/pdf/tm6-A43.pdf}
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##' @source \url{http://wwwbrr.cr.usgs.gov/projects/GWC_coupled/phreeqc}
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##' @usage iso.dat # phrLoadDatabaseString(iso.dat)
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##' @keywords dataset
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##' @keywords dataset
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NULL
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