Tony's rewrite of tidy_gas_phase, still pretty ugly.

git-svn-id: svn://136.177.114.72/svn_GW/phreeqc3/trunk@7933 1feff8c3-07ed-0310-ac33-dd36852eb9cd
This commit is contained in:
David L Parkhurst 2013-08-14 15:34:04 +00:00
parent ee4cd5ec90
commit 25a990751b
3 changed files with 31 additions and 210 deletions

View File

@ -2712,14 +2712,14 @@ calc_gas_pressures(void)
if (gas_phase_ptr->Get_total_moles() > 0)
{
V_m = gas_phase_ptr->Get_volume() / gas_phase_ptr->Get_total_moles();
if (V_m < 0.03)
if (V_m < 0.016)
{
V_m = 0.03;
V_m = 0.016;
} else if (V_m > 1e4)
{
V_m = 1e4;
}
if (gas_phase_ptr->Get_v_m() > 0.03)
if (gas_phase_ptr->Get_v_m() > 0.016)
{
if (V_m < 0.04)
V_m = (9. * gas_phase_ptr->Get_v_m() + V_m) / 10;

View File

@ -578,8 +578,8 @@ print_gas_phase(void)
(double) gas_phase_ptr->Get_volume()));
if(gas_phase_ptr->Get_total_moles() > 0)
output_msg(sformatf(" Molar volume: %10.2e liters/mole",
(double) (gas_phase_ptr->Get_volume() / gas_phase_ptr->Get_total_moles())));
if (!numerical_fixed_volume && ((PR && gas_phase_ptr->Get_volume() / gas_phase_ptr->Get_total_moles() <= 0.03) || (PR && gas_phase_ptr->Get_v_m() <= 0.03)))
(double) (gas_phase_ptr->Get_v_m())));
if (!numerical_fixed_volume && ((PR && gas_phase_ptr->Get_v_m() <= 0.016)))
output_msg(" WARNING: Program limit for Peng-Robinson.\n");
else
output_msg("\n");
@ -590,7 +590,7 @@ print_gas_phase(void)
output_msg(sformatf("\n%68s\n%78s\n", "Moles in gas",
"----------------------------------"));
if (gas_phase_ptr->Get_v_m() >= 0.03)
if (PR)
output_msg(sformatf( "%-11s%12s%12s%7s%12s%12s%12s\n\n", "Component",
"log P", "P", "phi", "Initial", "Final", "Delta"));
else

229
tidy.cpp
View File

@ -877,179 +877,6 @@ tidy_gas_phase(void)
P = 0.0;
std::vector<cxxGasComp> gc = gas_phase_ptr->Get_gas_comps();
for (size_t j = 0; j < gc.size(); j++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gc[j].Get_phase_name().c_str(), &k, FALSE);
if (phase_ptr == NULL)
{
input_error++;
error_string = sformatf(
"Gas not found in PHASES database, %s.",
gc[j].Get_phase_name().c_str());
error_msg(error_string, CONTINUE);
continue;
}
else
{
if (phase_ptr->t_c > 0 && phase_ptr->p_c > 0)
PR = true;
}
}
gas_phase_ptr->Set_pr_in(PR);
if (gas_phase_ptr->Get_new_def()) // true GAS_PHASE, false GAS_PHASE_MODIFY
{
for (size_t j = 0; j < gc.size(); j++)
{
gas_phase_ptr->Set_new_def(false);
/*
* Fixed pressure
*/
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
{
if (gas_phase_ptr->Get_solution_equilibria())
{
input_error++;
error_string = sformatf(
"Gas phase %d: cannot use '-equilibrium' option with fixed pressure gas phase.",
gas_phase_ptr->Get_n_user());
error_msg(error_string, CONTINUE);
}
/* calculate moles */
if (gc[j].Get_p_read() != NAN)
{
P += gc[j].Get_p_read();
gc[j].Set_moles(
gc[j].Get_p_read() * gas_phase_ptr->Get_volume() /
R_LITER_ATM / gas_phase_ptr->Get_temperature());
}
else
{
input_error++;
error_string = sformatf(
"Gas phase %d: partial pressure of gas component %s not defined.",
gas_phase_ptr->Get_n_user(), gc[j].Get_phase_name().c_str());
error_msg(error_string, CONTINUE);
}
}
else
{
/*
* Fixed volume
*/
if (!gas_phase_ptr->Get_solution_equilibria())
{
if (gc[j].Get_p_read() != NAN)
{
P += gc[j].Get_p_read();
gc[j].Set_moles (
gc[j].Get_p_read() *
gas_phase_ptr->Get_volume() / R_LITER_ATM /
gas_phase_ptr->Get_temperature());
}
else
{
input_error++;
error_string = sformatf(
"Gas phase %d: moles of gas component %s not defined.",
gas_phase_ptr->Get_n_user(),
gc[j].Get_phase_name().c_str());
error_msg(error_string, CONTINUE);
}
}
}
}
gas_phase_ptr->Set_gas_comps(gc);
if (PR && P > 0)
{
std::vector<struct phase *> phase_ptrs;
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(), &k, FALSE);
if (gc[j].Get_p_read() == 0)
continue;
phase_ptr->moles_x = gc[j].Get_p_read() / P;
phase_ptrs.push_back(phase_ptr);
}
V_m = calc_PR(phase_ptrs, P, gas_phase_ptr->Get_temperature(), 0);
gas_phase_ptr->Set_v_m(V_m);
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_VOLUME)
{
gas_phase_ptr->Set_total_p(P);
}
std::vector<cxxGasComp> gc = gas_phase_ptr->Get_gas_comps();
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gc[j].Get_phase_name().c_str(), &k, FALSE);
if (gc[j].Get_p_read() == 0)
{
gc[j].Set_moles(0.0);
} else
{
gc[j].Set_moles(phase_ptr->moles_x *
gas_phase_ptr->Get_volume() / V_m);
gas_phase_ptr->Set_total_moles(gas_phase_ptr->Get_total_moles() + gc[j].Get_moles());
}
}
gas_phase_ptr->Set_gas_comps(gc);
}
/*
* Duplicate gas phase, only if not solution equilibria
*/
if (!gas_phase_ptr->Get_solution_equilibria())
{
n_user = gas_phase_ptr->Get_n_user();
last = gas_phase_ptr->Get_n_user_end();
gas_phase_ptr->Set_n_user_end(n_user);
for (int j = n_user + 1; j <= last; j++)
{
Utilities::Rxn_copy(Rxn_gas_phase_map, n_user, j);
}
}
else
{
gas_phase_ptr->Set_new_def(true);
}
}
}
return (OK);
}
#ifdef SKIP
/* ---------------------------------------------------------------------- */
int Phreeqc::
tidy_gas_phase(void)
/* ---------------------------------------------------------------------- */
{
int n_user, last;
LDBLE P, V_m;
bool PR;
/*
* Find all gases for each gas_phase in phase list
*/
//std::map<int, cxxGasPhase>::iterator it = Rxn_gas_phase_map.begin();
//for ( ; it != Rxn_gas_phase_map.end(); it++)
//for (size_t nn = 0; nn < Rxn_new_gas_phase.size(); nn++)
//{
//std::map<int, cxxGasPhase>::iterator it = Rxn_gas_phase_map.find(Rxn_new_gas_phase[nn]);
for (std::set<int>::const_iterator nit = Rxn_new_gas_phase.begin(); nit != Rxn_new_gas_phase.end(); nit++)
{
std::map<int, cxxGasPhase>::iterator it = Rxn_gas_phase_map.find(*nit);
if (it == Rxn_gas_phase_map.end())
{
assert(false);
}
cxxGasPhase *gas_phase_ptr = &(it->second);
//if (!gas_phase_ptr->Get_new_def())
// continue;
//gas_phase_ptr->Set_new_def(false);
PR = false;
P = 0.0;
std::vector<cxxGasComp> gc = gas_phase_ptr->Get_gas_comps();
for (size_t j = 0; j < gc.size(); j++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gc[j].Get_phase_name().c_str(), &k, FALSE);
@ -1070,7 +897,8 @@ tidy_gas_phase(void)
gas_phase_ptr->Set_pr_in(PR);
if (gas_phase_ptr->Get_new_def())
{
gas_phase_ptr->Set_new_def(false);
if (j == gc.size() - 1)
gas_phase_ptr->Set_new_def(false);
/*
* Fixed pressure
*/
@ -1088,9 +916,10 @@ tidy_gas_phase(void)
if (gc[j].Get_p_read() != NAN)
{
P += gc[j].Get_p_read();
gc[j].Set_moles(
gc[j].Get_p_read() * gas_phase_ptr->Get_volume() /
R_LITER_ATM / gas_phase_ptr->Get_temperature());
if (!PR)
gc[j].Set_moles(
gc[j].Get_p_read() * gas_phase_ptr->Get_volume() /
R_LITER_ATM / gas_phase_ptr->Get_temperature());
}
else
{
@ -1111,10 +940,11 @@ tidy_gas_phase(void)
if (gc[j].Get_p_read() != NAN)
{
P += gc[j].Get_p_read();
gc[j].Set_moles (
gc[j].Get_p_read() *
gas_phase_ptr->Get_volume() / R_LITER_ATM /
gas_phase_ptr->Get_temperature());
if (!PR)
gc[j].Set_moles (
gc[j].Get_p_read() *
gas_phase_ptr->Get_volume() / R_LITER_ATM /
gas_phase_ptr->Get_temperature());
}
else
{
@ -1131,16 +961,17 @@ tidy_gas_phase(void)
gas_phase_ptr->Set_gas_comps(gc);
if (PR && P > 0)
if (PR && P > 0 && j == gc.size() - 1)
{
std::vector<struct phase *> phase_ptrs;
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
size_t j_PR;
for (j_PR = 0; j_PR < gas_phase_ptr->Get_gas_comps().size(); j_PR++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(), &k, FALSE);
if (gc[j].Get_p_read() == 0)
struct phase *phase_ptr = phase_bsearch(gas_phase_ptr->Get_gas_comps()[j_PR].Get_phase_name().c_str(), &k, FALSE);
if (gc[j_PR].Get_p_read() == 0)
continue;
phase_ptr->moles_x = gc[j].Get_p_read() / P;
phase_ptr->moles_x = gc[j_PR].Get_p_read() / P;
phase_ptrs.push_back(phase_ptr);
}
V_m = calc_PR(phase_ptrs, P, gas_phase_ptr->Get_temperature(), 0);
@ -1150,18 +981,18 @@ tidy_gas_phase(void)
gas_phase_ptr->Set_total_p(P);
}
std::vector<cxxGasComp> gc = gas_phase_ptr->Get_gas_comps();
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
for (j_PR = 0; j_PR < gas_phase_ptr->Get_gas_comps().size(); j_PR++)
{
int k;
struct phase *phase_ptr = phase_bsearch(gc[j].Get_phase_name().c_str(), &k, FALSE);
if (gc[j].Get_p_read() == 0)
struct phase *phase_ptr = phase_bsearch(gc[j_PR].Get_phase_name().c_str(), &k, FALSE);
if (gc[j_PR].Get_p_read() == 0)
{
gc[j].Set_moles(0.0);
gc[j_PR].Set_moles(0.0);
} else
{
gc[j].Set_moles(phase_ptr->moles_x *
gc[j_PR].Set_moles(phase_ptr->moles_x *
gas_phase_ptr->Get_volume() / V_m);
gas_phase_ptr->Set_total_moles(gas_phase_ptr->Get_total_moles() + gc[j].Get_moles());
gas_phase_ptr->Set_total_moles(gas_phase_ptr->Get_total_moles() + gc[j_PR].Get_moles());
}
}
gas_phase_ptr->Set_gas_comps(gc);
@ -1174,9 +1005,9 @@ tidy_gas_phase(void)
n_user = gas_phase_ptr->Get_n_user();
last = gas_phase_ptr->Get_n_user_end();
gas_phase_ptr->Set_n_user_end(n_user);
for (int j = n_user + 1; j <= last; j++)
for (int j1 = n_user + 1; j1 <= last; j1++)
{
Utilities::Rxn_copy(Rxn_gas_phase_map, n_user, j);
Utilities::Rxn_copy(Rxn_gas_phase_map, n_user, j1);
}
}
else
@ -1188,7 +1019,6 @@ tidy_gas_phase(void)
}
return (OK);
}
#endif
/* ---------------------------------------------------------------------- */
int Phreeqc::
tidy_inverse(void)
@ -4408,15 +4238,6 @@ ss_calc_a0_a1(cxxSS *ss_ptr)
tol = 1e-6;
rt = ss_ptr->Get_tk() * R_KJ_DEG_MOL;
if (ss_ptr->Get_ss_comps().size() < 2)
{
input_error++;
error_string = sformatf(
"Two components were not defined for %s solid solution",
ss_ptr->Get_name().c_str());
error_msg(error_string, CONTINUE);
return (ERROR);
}
cxxSScomp *comp0_ptr = &(ss_ptr->Get_ss_comps()[0]);
cxxSScomp *comp1_ptr = &(ss_ptr->Get_ss_comps()[1]);
int k;