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Manual date for Windows.
Working on Linux. git-svn-id: svn://136.177.114.72/svn_GW/phreeqc3/trunk@7323 1feff8c3-07ed-0310-ac33-dd36852eb9cd
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David L Parkhurst
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README.Linux.txt
113
README.Linux.txt
@ -15,7 +15,7 @@ Notepad++ interface is available at http://www.hydrochemistry.eu/downl.html.)
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PHREEQC - Version @VERSION@ @VER_DATE@
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Instructions for installation, execution, and testing are provided below. After
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Instructions for installing, executing, and testing are provided below. After
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installation, see the phreeqc.txt file in the doc directory of the PHREEQC
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installation for summary information on PHREEQC and the RELEASE.TXT file for
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new features and bug fixes.
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@ -25,11 +25,10 @@ new features and bug fixes.
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A. Distribution files
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B. Documentation
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C. Extracting files
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D. Compiling (optional)
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E. Installing PHREEQC
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F. Running the batch program
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G. Testing and example problems
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H. Contacts
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D. Compiling and installing PHREEQC
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E. Running the batch program
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F. Testing and example problems
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G. Contacts
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A. Distribution files
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@ -37,9 +36,9 @@ A. Distribution files
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The following distribution packages (containing the software, test data
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sets, and information files) are currently available for Linux systems:
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phreeqc-@VERSION@.@REVISION@.Linux.tar.gz--Compiled with @GCC_VER@
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phreeqc-@VERSION@-@REVISION@.Linux.tar.gz--Compiled with @GCC_VER@
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kernel @KERNEL_VER@
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phreeqc-@VERSION@.@REVISION@.source.tar.gz--Source code but no executable
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phreeqc-@VERSION@-@REVISION@.source.tar.gz--Source code, but no executable
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B. Documentation
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@ -48,7 +47,7 @@ B. Documentation
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Document Format (PDF) files are included in the doc subdirectory of the
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PHREEQC program distribution.
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Parkhurst, D.L., and Appelo, C.A.J., 2012, Description of input and examples
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Parkhurst, D.L., and Appelo, C.A.J., 2013, Description of input and examples
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for PHREEQC version 3--A computer program for speciation, batch-reaction,
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one- dimensional transport, and inverse geochemical calculations: U.S.
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Geological Survey Techniques and Methods, book 6, chap. A43, 497 p.
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@ -87,13 +86,14 @@ C. Extracting files
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Compressed tar files are used to distribute the source code and versions of the
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software compiled for Linux operating systems. All of the files needed to
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install and test PHREEQC are contained in the file
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phreeqc-@VERSION@.@REVISION@.Linux.tar.gz. A Linux executable file is included,
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phreeqc-@VERSION@-@REVISION@.Linux.tar.gz. A Linux executable file is included,
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which is compiled with @GCC_VER@ kernel @KERNEL_VER@. If you want to compile
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the program for another operating system, the file
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phreeqc-@VERSION@.@REVISION@.source.tar.gz contains all of the files needed to
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compile and install PHREEQC. For all tar files, the directory phreeqc-@VERSION@
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is created when the files are extracted; if this directory already exists, you
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may want to delete or rename it before extracting the files.
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phreeqc-@VERSION@-@REVISION@.source.tar.gz contains all of the files needed to
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compile and install PHREEQC. For all tar files, the directory
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phreeqc-@VERSION@-@REVISION@ is created when the files are extracted; if this
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directory already exists, you may want to delete or rename it before extracting
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the files.
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Follow the steps below to extract the files from a distribution tar
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file.
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@ -101,7 +101,7 @@ file.
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Steps in extracting files Explanation
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---------------------------------------- -----------------------------------
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gunzip phreeqc-@VERSION@-@REVISION@.Linux.tar.gz Uncompress the
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distribution file.
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tar.gz file.
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tar -xvpof phreeqc-@VERSION@-@REVISION@.Linux.tar Extract files from the tar
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file.
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@ -123,9 +123,8 @@ Notes: (a) A compiled executable is not included in the source
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directory structure. If you plan to put files in the PHREEQC
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directory structure, do so only by creating subdirectories.
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D. Compiling (optional)
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XXXXXXXXXXXXXXX need to describe confinure here XXXXXXXXXXXXXXXXXX
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D. Compiling and installing PHREEQC
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If you can use the executable in the Linux.tar.gz version of the distribution
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of the software, skip to the Installing section below.
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@ -145,56 +144,43 @@ configure, and the Makefile can be used to compile the software.
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To compile PHREEQC, do the following:
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1. Change directory to the source directory:
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cd phreeqc-@VERSION@/src
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1. Change directory to the directory that was extracted from the tar file.
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2. Modify the beginning of the file named Makefile to correctly specify
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system-dependent variables:
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CC C compiler name
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CCFLAGS C compiler flags
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LOADFLAGS linker flags
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MULTICHART Requires WINE and zedgraph .NET control
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INVERSE_CL1MP Requires gmp (gnu multiprecision package).Do not define
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if the gmp package is not available on your system
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cd phreeqc-@VERSION@-@REVISION@
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2. Make a directory, for example, Release.
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mkdir Release
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3. Change directory to Release.
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cd Release
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3. Run "configure".
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4. Run configure
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../configure
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Many of the options for configure can be seen by typing:
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../configure --help
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4. Run "make" to compile the source:
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5. Compile the program
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make
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6. Check that compiled version runs the test cases
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make check
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make
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make will:
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a. compile the source code, and
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b. place the program executable in the PHREEQC bin directory.
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7. Install the program. By default the program is installed in
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/usr/local/bin, /usr/local/lib, etc. You can specify an sstallation prefix
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other than "/usr/local" by using the"--prefix", --prefix=$HOME for
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example.
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make install
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E. Installing PHREEQC
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To make PHREEQC easy to use, a link to the script that runs PHREEQC
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should be placed in a directory that is included in each user's search
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path. Run make in the PHREEQC src subdirectory to create the link:
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make install BINDIR=directory_for_links
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A script for running the executable is placed in the PHREEQC installation
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directory and a link to that script is placed in the directory defined
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by BINDIR. If each user's search path consists of
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/usr/bin:/usr/opt/bin:/usr/local/bin
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using the command
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make install BINDIR=/usr/local/bin
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will make PHREEQC accessible from any directory without requiring the full
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pathname of the executable. Note that to create and delete links to the
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PHREEQC script, the installer must have sufficient rights to the BINDIR
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directory. By default, BINDIR is $HOME/bin.
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F. Running the program
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E. Running the program
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If PHREEQC has been installed in a directory included in the users' PATH, the
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program can be executed with any of the commands below.
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@ -242,7 +228,7 @@ in the script in the installation directory to
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phreeqc-@VERSION@/database/phreeqc.dat. It is possible to specify a different
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default database by editing the script.
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G. Testing and example problems
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F. Testing and example problems
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Input files are provided to verify that the program is correctly installed and
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running on the system. The tests execute the examples presented in the user's
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@ -351,7 +337,8 @@ test description of test and files
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22 Modeling gas solubilities: CO2 at high pressures
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H. CONTACTS
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G. CONTACTS
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Inquiries about this software distribution should be directed to:
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@ -59,7 +59,7 @@ Charlton, S.R., and Parkhurst, D.L., 2002, PhreeqcI--A graphical user
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Document Format (PDF) files are included in the doc subdirectory of the
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PHREEQC program distribution.
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Parkhurst, D.L., and Appelo, C.A.J., 2012, Description of input and examples
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Parkhurst, D.L., and Appelo, C.A.J., 2013, Description of input and examples
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for PHREEQC version 3--A computer program for speciation, batch-reaction,
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one- dimensional transport, and inverse geochemical calculations: U.S.
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Geological Survey Techniques and Methods, book 6, chap. A43, 497 p.
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