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Tony's vm revisions, phreeqc.dat gfw for N redox states

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git-svn-id: svn://136.177.114.72/svn_GW/phreeqc3/trunk@8204 1feff8c3-07ed-0310-ac33-dd36852eb9cd
This commit is contained in:
David L Parkhurst 2013-11-18 20:58:12 +00:00
parent c80ebbc630
commit ab5384de2a
1 changed files with 42 additions and 37 deletions
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79
Makefile
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@ -58,13 +58,14 @@ am__phreeqc_SOURCES_DIST = class_main.cpp cxxKinetics.cxx \
PHRQ_io.cpp PHRQ_io.h PPassemblage.cxx PPassemblage.h \
PPassemblageComp.cxx PPassemblageComp.h Pressure.cxx \
Pressure.h Reaction.cxx Reaction.h ReadClass.cxx runner.cpp \
runner.h Solution.cxx Solution.h SolutionIsotope.cxx \
SolutionIsotope.h SSassemblage.cxx SSassemblage.h SS.cxx SS.h \
SScomp.cxx SScomp.h StorageBin.cxx StorageBin.h \
StorageBinList.cpp StorageBinList.h Surface.cxx Surface.h \
SurfaceCharge.cxx SurfaceCharge.h SurfaceComp.cxx \
SurfaceComp.h System.cxx System.h Temperature.cxx \
Temperature.h Use.cpp Use.h Utils.cxx Utils.h advection.cpp \
runner.h SelectedOutput.cpp SelectedOutput.h Solution.cxx \
Solution.h SolutionIsotope.cxx SolutionIsotope.h \
SSassemblage.cxx SSassemblage.h SS.cxx SS.h SScomp.cxx \
SScomp.h StorageBin.cxx StorageBin.h StorageBinList.cpp \
StorageBinList.h Surface.cxx Surface.h SurfaceCharge.cxx \
SurfaceCharge.h SurfaceComp.cxx SurfaceComp.h System.cxx \
System.h Temperature.cxx Temperature.h Use.cpp Use.h \
UserPunch.cpp UserPunch.h Utils.cxx Utils.h advection.cpp \
basicsubs.cpp cl1.cpp cvdense.cpp cvdense.h cvode.cpp cvode.h \
dense.cpp dense.h dw.cpp gases.cpp global_structures.h \
input.cpp integrate.cpp inverse.cpp isotopes.cpp kinetics.cpp \
@ -85,20 +86,21 @@ am_phreeqc_OBJECTS = class_main.$(OBJEXT) cxxKinetics.$(OBJEXT) \
Phreeqc.$(OBJEXT) PHRQ_base.$(OBJEXT) PHRQ_io.$(OBJEXT) \
PPassemblage.$(OBJEXT) PPassemblageComp.$(OBJEXT) \
Pressure.$(OBJEXT) Reaction.$(OBJEXT) ReadClass.$(OBJEXT) \
runner.$(OBJEXT) Solution.$(OBJEXT) SolutionIsotope.$(OBJEXT) \
SSassemblage.$(OBJEXT) SS.$(OBJEXT) SScomp.$(OBJEXT) \
StorageBin.$(OBJEXT) StorageBinList.$(OBJEXT) \
runner.$(OBJEXT) SelectedOutput.$(OBJEXT) Solution.$(OBJEXT) \
SolutionIsotope.$(OBJEXT) SSassemblage.$(OBJEXT) SS.$(OBJEXT) \
SScomp.$(OBJEXT) StorageBin.$(OBJEXT) StorageBinList.$(OBJEXT) \
Surface.$(OBJEXT) SurfaceCharge.$(OBJEXT) \
SurfaceComp.$(OBJEXT) System.$(OBJEXT) Temperature.$(OBJEXT) \
Use.$(OBJEXT) Utils.$(OBJEXT) advection.$(OBJEXT) \
basicsubs.$(OBJEXT) cl1.$(OBJEXT) cvdense.$(OBJEXT) \
cvode.$(OBJEXT) dense.$(OBJEXT) dw.$(OBJEXT) gases.$(OBJEXT) \
input.$(OBJEXT) integrate.$(OBJEXT) inverse.$(OBJEXT) \
isotopes.$(OBJEXT) kinetics.$(OBJEXT) mainsubs.$(OBJEXT) \
model.$(OBJEXT) nvector.$(OBJEXT) nvector_serial.$(OBJEXT) \
parse.$(OBJEXT) phqalloc.$(OBJEXT) PHRQ_io_output.$(OBJEXT) \
pitzer.$(OBJEXT) pitzer_structures.$(OBJEXT) prep.$(OBJEXT) \
print.$(OBJEXT) read.$(OBJEXT) readtr.$(OBJEXT) sit.$(OBJEXT) \
Use.$(OBJEXT) UserPunch.$(OBJEXT) Utils.$(OBJEXT) \
advection.$(OBJEXT) basicsubs.$(OBJEXT) cl1.$(OBJEXT) \
cvdense.$(OBJEXT) cvode.$(OBJEXT) dense.$(OBJEXT) dw.$(OBJEXT) \
gases.$(OBJEXT) input.$(OBJEXT) integrate.$(OBJEXT) \
inverse.$(OBJEXT) isotopes.$(OBJEXT) kinetics.$(OBJEXT) \
mainsubs.$(OBJEXT) model.$(OBJEXT) nvector.$(OBJEXT) \
nvector_serial.$(OBJEXT) parse.$(OBJEXT) phqalloc.$(OBJEXT) \
PHRQ_io_output.$(OBJEXT) pitzer.$(OBJEXT) \
pitzer_structures.$(OBJEXT) prep.$(OBJEXT) print.$(OBJEXT) \
read.$(OBJEXT) readtr.$(OBJEXT) sit.$(OBJEXT) \
smalldense.$(OBJEXT) spread.$(OBJEXT) step.$(OBJEXT) \
structures.$(OBJEXT) sundialsmath.$(OBJEXT) tally.$(OBJEXT) \
tidy.$(OBJEXT) transport.$(OBJEXT) utilities.$(OBJEXT) \
@ -125,11 +127,11 @@ DIST_SOURCES = $(am__phreeqc_SOURCES_DIST)
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run aclocal-1.11
AMTAR = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run tar
AUTOCONF = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run autoconf
AUTOHEADER = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run autoheader
AUTOMAKE = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run automake-1.11
ACLOCAL = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run aclocal-1.11
AMTAR = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run tar
AUTOCONF = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run autoconf
AUTOHEADER = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run autoheader
AUTOMAKE = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run automake-1.11
AWK = gawk
CPPFLAGS =
CXX = g++
@ -155,7 +157,7 @@ LIBGMP = -lgmp
LIBOBJS =
LIBS =
LTLIBOBJS =
MAKEINFO = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/missing --run makeinfo
MAKEINFO = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/missing --run makeinfo
MKDIR_P = /bin/mkdir -p
OBJEXT = o
PACKAGE = phreeqc
@ -170,10 +172,10 @@ SET_MAKE =
SHELL = /bin/sh
STRIP =
VERSION = 3.0.0-7109
abs_builddir = /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/src
abs_srcdir = /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/src
abs_top_builddir = /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk
abs_top_srcdir = /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk
abs_builddir = /lobo02home/dlpark/programs/phreeqc3-trunk/src
abs_srcdir = /lobo02home/dlpark/programs/phreeqc3-trunk/src
abs_top_builddir = /lobo02home/dlpark/programs/phreeqc3-trunk
abs_top_srcdir = /lobo02home/dlpark/programs/phreeqc3-trunk
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
@ -192,7 +194,7 @@ host_alias =
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /lobo02home/dlpark/charlton/programs/phreeqc/phreeqc3-trunk/config/install-sh
install_sh = ${SHELL} /lobo02home/dlpark/programs/phreeqc3-trunk/config/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
@ -226,13 +228,14 @@ phreeqc_SOURCES = class_main.cpp cxxKinetics.cxx cxxKinetics.h \
PHRQ_io.cpp PHRQ_io.h PPassemblage.cxx PPassemblage.h \
PPassemblageComp.cxx PPassemblageComp.h Pressure.cxx \
Pressure.h Reaction.cxx Reaction.h ReadClass.cxx runner.cpp \
runner.h Solution.cxx Solution.h SolutionIsotope.cxx \
SolutionIsotope.h SSassemblage.cxx SSassemblage.h SS.cxx SS.h \
SScomp.cxx SScomp.h StorageBin.cxx StorageBin.h \
StorageBinList.cpp StorageBinList.h Surface.cxx Surface.h \
SurfaceCharge.cxx SurfaceCharge.h SurfaceComp.cxx \
SurfaceComp.h System.cxx System.h Temperature.cxx \
Temperature.h Use.cpp Use.h Utils.cxx Utils.h advection.cpp \
runner.h SelectedOutput.cpp SelectedOutput.h Solution.cxx \
Solution.h SolutionIsotope.cxx SolutionIsotope.h \
SSassemblage.cxx SSassemblage.h SS.cxx SS.h SScomp.cxx \
SScomp.h StorageBin.cxx StorageBin.h StorageBinList.cpp \
StorageBinList.h Surface.cxx Surface.h SurfaceCharge.cxx \
SurfaceCharge.h SurfaceComp.cxx SurfaceComp.h System.cxx \
System.h Temperature.cxx Temperature.h Use.cpp Use.h \
UserPunch.cpp UserPunch.h Utils.cxx Utils.h advection.cpp \
basicsubs.cpp cl1.cpp cvdense.cpp cvdense.h cvode.cpp cvode.h \
dense.cpp dense.h dw.cpp gases.cpp global_structures.h \
input.cpp integrate.cpp inverse.cpp isotopes.cpp kinetics.cpp \
@ -349,6 +352,7 @@ include ./$(DEPDIR)/ReadClass.Po
include ./$(DEPDIR)/SS.Po
include ./$(DEPDIR)/SSassemblage.Po
include ./$(DEPDIR)/SScomp.Po
include ./$(DEPDIR)/SelectedOutput.Po
include ./$(DEPDIR)/Solution.Po
include ./$(DEPDIR)/SolutionIsotope.Po
include ./$(DEPDIR)/StorageBin.Po
@ -359,6 +363,7 @@ include ./$(DEPDIR)/SurfaceComp.Po
include ./$(DEPDIR)/System.Po
include ./$(DEPDIR)/Temperature.Po
include ./$(DEPDIR)/Use.Po
include ./$(DEPDIR)/UserPunch.Po
include ./$(DEPDIR)/Utils.Po
include ./$(DEPDIR)/advection.Po
include ./$(DEPDIR)/basicsubs.Po