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Input file: ../examples/ex13a
Output file: ex13a.out
Database file: ../database/phreeqc.dat
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Reading data base.
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SOLUTION_MASTER_SPECIES
SOLUTION_SPECIES
PHASES
GAS_BINARY_PARAMETERS
EXCHANGE_MASTER_SPECIES
EXCHANGE_SPECIES
SURFACE_MASTER_SPECIES
SURFACE_SPECIES
MEAN_GAMMAS
RATES
END
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Reading input data for simulation 1.
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TITLE Example 13A.--1 mmol/L NaCl/NO3 enters column with stagnant zones.
Implicit definition of first-order exchange model.
SOLUTION 0 # 1 mmol/L NaCl
units mmol/l
pH 7.0
pe 13.0 O2(g) -0.7
Na 1.0 # Na has Retardation = 2
Cl 1.0 # Cl has Retardation = 1, stagnant exchange
N(5) 1.0 # NO3 is conservative
END
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TITLE
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Example 13A.--1 mmol/L NaCl/NO3 enters column with stagnant zones.
Implicit definition of first-order exchange model.
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Beginning of initial solution calculations.
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Initial solution 0.
-----------------------------Solution composition------------------------------
Elements Molality Moles
Cl 1.000e-03 1.000e-03
N(5) 1.000e-03 1.000e-03
Na 1.000e-03 1.000e-03
----------------------------Description of solution----------------------------
pH = 7.000
pe = 13.622 Equilibrium with O2(g)
Specific Conductance (µS/cm, 25°C) = 191
Density (g/cm³) = 0.99712
Volume (L) = 1.00302
Viscosity (mPa s) = 0.89024
Activity of water = 1.000
Ionic strength (mol/kgw) = 1.500e-03
Mass of water (kg) = 1.000e+00
Total alkalinity (eq/kg) = 1.516e-09
Temperature (°C) = 25.00
Electrical balance (eq) = -1.000e-03
Percent error, 100*(Cat-|An|)/(Cat+|An|) = -33.33
Iterations = 3
Total H = 1.110124e+02
Total O = 5.550973e+01
----------------------------Distribution of species----------------------------
Log Log Log mole V
Species Molality Activity Molality Activity Gamma cm³/mol
OH- 1.057e-07 1.012e-07 -6.976 -6.995 -0.019 -4.10
H+ 1.042e-07 1.000e-07 -6.982 -7.000 -0.018 0.00
H2O 5.551e+01 9.999e-01 1.744 -0.000 0.000 18.07
Cl 1.000e-03
Cl- 1.000e-03 9.576e-04 -3.000 -3.019 -0.019 18.08
HCl 3.294e-11 3.299e-11 -10.482 -10.482 0.001 (0)
H(0) 0.000e+00
H2 0.000e+00 0.000e+00 -44.394 -44.394 0.000 28.61
N(5) 1.000e-03
NO3- 1.000e-03 9.572e-04 -3.000 -3.019 -0.019 29.50
Na 1.000e-03
Na+ 1.000e-03 9.580e-04 -3.000 -3.019 -0.019 -1.47
O(0) 5.110e-04
O2 2.555e-04 2.556e-04 -3.593 -3.592 0.000 30.40
------------------------------Saturation indices-------------------------------
Phase SI** log IAP log K(298 K, 1 atm)
H2(g) -41.29 -44.39 -3.10 H2
H2O(g) -1.50 -0.00 1.50 H2O
Halite -7.61 -6.04 1.57 NaCl
O2(g) -0.70 -3.59 -2.89 O2 Pressure 0.2 atm, phi 1.000
**For a gas, SI = log10(fugacity). Fugacity = pressure * phi / 1 atm.
For ideal gases, phi = 1.
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End of simulation.
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Reading input data for simulation 2.
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SOLUTION 1-41 # Column with KNO3
units mmol/l
pH 7.0
pe 13.0 O2(g) -0.7
K 1.0
N(5) 1.0
EXCHANGE_SPECIES # For linear exchange, make KX exch. coeff. equal to NaX
K+ + X- = KX
log_k 0.0
gamma 3.5 0.015
EXCHANGE 1-41
equilibrate 1
X 1.e-3
END
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Beginning of initial solution calculations.
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Initial solution 1.
-----------------------------Solution composition------------------------------
Elements Molality Moles
K 1.000e-03 1.000e-03
N(5) 1.000e-03 1.000e-03
----------------------------Description of solution----------------------------
pH = 7.000
pe = 13.622 Equilibrium with O2(g)
Specific Conductance (µS/cm, 25°C) = 141
Density (g/cm³) = 0.99711
Volume (L) = 1.00301
Viscosity (mPa s) = 0.89011
Activity of water = 1.000
Ionic strength (mol/kgw) = 1.000e-03
Mass of water (kg) = 1.000e+00
Total alkalinity (eq/kg) = 1.450e-09
Temperature (°C) = 25.00
Electrical balance (eq) = -1.450e-09
Percent error, 100*(Cat-|An|)/(Cat+|An|) = -0.00
Iterations = 3
Total H = 1.110124e+02
Total O = 5.550973e+01
----------------------------Distribution of species----------------------------
Log Log Log mole V
Species Molality Activity Molality Activity Gamma cm³/mol
OH- 1.049e-07 1.012e-07 -6.979 -6.995 -0.016 -4.11
H+ 1.035e-07 1.000e-07 -6.985 -7.000 -0.015 0.00
H2O 5.551e+01 1.000e+00 1.744 -0.000 0.000 18.07
H(0) 0.000e+00
H2 0.000e+00 0.000e+00 -44.394 -44.394 0.000 28.61
K 1.000e-03
K+ 1.000e-03 9.649e-04 -3.000 -3.016 -0.016 9.01
N(5) 1.000e-03
NO3- 1.000e-03 9.647e-04 -3.000 -3.016 -0.016 29.49
O(0) 5.111e-04
O2 2.555e-04 2.556e-04 -3.593 -3.592 0.000 30.40
------------------------------Saturation indices-------------------------------
Phase SI** log IAP log K(298 K, 1 atm)
H2(g) -41.29 -44.39 -3.10 H2
H2O(g) -1.50 -0.00 1.50 H2O
O2(g) -0.70 -3.59 -2.89 O2 Pressure 0.2 atm, phi 1.000
**For a gas, SI = log10(fugacity). Fugacity = pressure * phi / 1 atm.
For ideal gases, phi = 1.
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Beginning of initial exchange-composition calculations.
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Exchange 1.
X 1.000e-03 mol
Equiv- Equivalent Log
Species Moles alents Fraction Gamma
KX 1.000e-03 1.000e-03 1.000e+00 -0.016
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Beginning of batch-reaction calculations.
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Reaction step 1.
Using solution 1.
Using exchange 1. Exchange assemblage after simulation 2.
-----------------------------Exchange composition------------------------------
X 1.000e-03 mol
Equiv- Equivalent Log
Species Moles alents Fraction Gamma
KX 1.000e-03 1.000e-03 1.000e+00 -0.016
NH4X 5.034e-63 5.034e-63 5.034e-60 -0.016
-----------------------------Solution composition------------------------------
Elements Molality Moles
K 1.000e-03 1.000e-03
N 1.000e-03 1.000e-03
----------------------------Description of solution----------------------------
pH = 7.000 Charge balance
pe = 13.622 Adjusted to redox equilibrium
Specific Conductance (µS/cm, 25°C) = 141
Density (g/cm³) = 0.99711
Volume (L) = 1.00301
Viscosity (mPa s) = 0.89011
Activity of water = 1.000
Ionic strength (mol/kgw) = 1.000e-03
Mass of water (kg) = 1.000e+00
Total alkalinity (eq/kg) = 1.450e-09
Temperature (°C) = 25.00
Electrical balance (eq) = -1.450e-09
Percent error, 100*(Cat-|An|)/(Cat+|An|) = -0.00
Iterations = 0
Total H = 1.110124e+02
Total O = 5.550973e+01
----------------------------Distribution of species----------------------------
Log Log Log mole V
Species Molality Activity Molality Activity Gamma cm³/mol
OH- 1.049e-07 1.012e-07 -6.979 -6.995 -0.016 -4.11
H+ 1.035e-07 1.000e-07 -6.985 -7.000 -0.015 0.00
H2O 5.551e+01 1.000e+00 1.744 -0.000 0.000 18.07
H(0) 0.000e+00
H2 0.000e+00 0.000e+00 -44.394 -44.394 0.000 28.61
K 1.000e-03
K+ 1.000e-03 9.649e-04 -3.000 -3.016 -0.016 9.01
N(-3) 0.000e+00
NH4+ 0.000e+00 0.000e+00 -62.898 -62.914 -0.016 17.89
NH3 0.000e+00 0.000e+00 -65.158 -65.158 0.000 24.42
N(0) 1.351e-19
N2 6.757e-20 6.759e-20 -19.170 -19.170 0.000 29.29
N(3) 2.120e-16
NO2- 2.120e-16 2.045e-16 -15.674 -15.689 -0.016 24.97
N(5) 1.000e-03
NO3- 1.000e-03 9.647e-04 -3.000 -3.016 -0.016 29.49
O(0) 5.111e-04
O2 2.555e-04 2.556e-04 -3.593 -3.592 0.000 30.40
------------------------------Saturation indices-------------------------------
Phase SI** log IAP log K(298 K, 1 atm)
H2(g) -41.29 -44.39 -3.10 H2
H2O(g) -1.50 -0.00 1.50 H2O
N2(g) -15.99 -19.17 -3.18 N2
NH3(g) -66.95 -65.16 1.80 NH3
O2(g) -0.70 -3.59 -2.89 O2
**For a gas, SI = log10(fugacity). Fugacity = pressure * phi / 1 atm.
For ideal gases, phi = 1.
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End of simulation.
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Reading input data for simulation 3.
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PRINT
reset false
status false
TRANSPORT
cells 20
shifts 5
flow_direction forward
time_step 3600
boundary_conditions flux flux
diffusion_coefficient 0.0
lengths 0.1
dispersivities 0.015
stagnant 1 6.8e-6 0.3 0.1
END
WARNING: Cell-lengths were read for 1 cells. Last value is used till cell 20.
WARNING: Dispersivities were read for 1 cells. Last value is used till cell 20.
WARNING:
Calculating transport: 20 (mobile) cells, 5 shifts, 1 mixruns...
SOLUTION 0 # Original solution with KNO3 reenters
units mmol/l
pH 7.0
pe 13.0 O2(g) -0.7
K 1.0
N(5) 1.0
END
SELECTED_OUTPUT
file ex13a.sel
reset false
solution
distance true
USER_PUNCH
headings Cl_mmol Na_mmol
10 PUNCH TOT("Cl")*1000, TOT("Na")*1000
TRANSPORT
shifts 10
punch_cells 1-20
punch_frequency 10
USER_GRAPH 1 Example 13A
-headings Distance Na Cl
-chart_title "Dual Porosity, First-Order Exchange with Implicit Mixing Factors"
-axis_titles "Distance, in meters" "Millimoles per kilogram water"
-axis_scale x_axis 0 2
-axis_scale y_axis 0 0.8
-plot_concentration_vs x
-start
10 GRAPH_X DIST
20 GRAPH_Y TOT("Na")*1000 TOT("Cl")*1000
-end
END
WARNING:
Calculating transport: 20 (mobile) cells, 10 shifts, 1 mixruns...