mirror of
https://git.gfz-potsdam.de/naaice/iphreeqc.git
synced 2025-12-15 16:18:22 +01:00
452 lines
14 KiB
YAML
452 lines
14 KiB
YAML
name: CMake
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on:
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push:
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pull_request:
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branches: [ master ]
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schedule:
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- cron: '15 14 4,11,18,25 * *'
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workflow_dispatch:
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env:
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# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
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BUILD_TYPE: Release
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NAME: IPhreeqc
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jobs:
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init:
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runs-on: ubuntu-latest
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# Map step outputs to job outputs
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outputs:
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VER: ${{ steps.vars.outputs.VER }}
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REL: ${{ steps.vars.outputs.REL }}
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DATE: ${{ steps.vars.outputs.DATE }}
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DATE_RFC_3339: ${{ steps.vars.outputs.DATE_RFC_3339 }}
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steps:
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- name: Setup vars
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id: vars
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run: |
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echo VER=$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/next_ver.sh | sh) >> $GITHUB_OUTPUT
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echo REL=$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/rel.py | python3) >> $GITHUB_OUTPUT
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echo DATE=$(date "+%x") >> $GITHUB_OUTPUT
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echo DATE_RFC_3339=$(date --rfc-3339=date) >> $GITHUB_OUTPUT
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test:
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strategy:
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fail-fast: false
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matrix:
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os: [macos-latest, ubuntu-latest, windows-latest]
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runs-on: ${{ matrix.os }}
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steps:
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- uses: actions/checkout@v3
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- name: Install ninja valgrind (Linux)
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if: runner.os == 'Linux'
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run: sudo apt-get update && sudo apt-get install -y ninja-build valgrind
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- name: Install ninja (macOS)
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if: runner.os == 'macOS'
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run: brew install ninja
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- name: Set up Visual Studio shell (Windows)
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if: runner.os == 'Windows'
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uses: egor-tensin/vs-shell@v2
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with:
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arch: x64
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- name: CTest
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run: ctest -S ctest.cmake -V --output-on-failure --timeout 900
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- name: Upload results
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uses: actions/upload-artifact@v3
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with:
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name: ${{ matrix.os }}-test-results
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path: ${{ github.workspace }}/_ctest/Testing/
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chm:
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runs-on: windows-latest
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steps:
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- name: Checkout phreeqc3-HTMLversion
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uses: actions/checkout@v3
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with:
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repository: usgs-coupled-subtrees/phreeqc3-HTMLversion
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ref: master
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- name: cache htmlhelp
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id: cache-htmlhelp
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uses: actions/cache@v3
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with:
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path: "C:/Program Files (x86)/HTML Help Workshop"
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key: ${{ runner.os }}-htmlhelp
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- name: install htmlhelp
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if: steps.cache-htmlhelp.outputs.cache-hit != 'true'
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timeout-minutes: 5
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run: |
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curl -L -O --max-time 120 http://web.archive.org/web/20160201063255/http://download.microsoft.com/download/0/A/9/0A939EF6-E31C-430F-A3DF-DFAE7960D564/htmlhelp.exe
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cmd /c start /wait .\htmlhelp.exe /q /c /t:$(Get-Location)\tmp
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$file = "$(Get-Location)\tmp\htmlhelp.inf"
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(Get-Content $file) | Foreach-Object { $_ `
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-replace '^BeginPrompt', ';;BeginPrompt' `
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-replace '^EndPrompt', ';;EndPrompt' `
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-replace '^49000=CustomLDID49000, 1', '49000=CustomLDID49000, 5' `
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-replace '^"hhupd.exe', ';;hhupd.exe' `
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-replace '^DefaultInstallDir="C:\\Program Files\\HTML Help Workshop"', 'DefaultInstallDir="%ProgramFiles%\\HTML Help Workshop"'
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} | Set-Content $file
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cmd /c start /wait .\tmp\setup.exe
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Remove-Item -Recurse -Force .\tmp
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Remove-Item -Recurse -Force .\htmlhelp.exe
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# the next line doesn't seem to work (supposed to set the path)
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# echo 'C:\Program Files (x86)\HTML Help Workshop' >> $GITHUB_PATH
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- name: compile chm
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shell: bash
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run: |
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pushd HTML
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bash fixup_html.bash
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popd
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# hhc returns 1 on success
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set +e
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'C:\Program Files (x86)\HTML Help Workshop\hhc' phreeqc3.hhp | tee hhc.out
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status=${PIPESTATUS[0]}
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set -e
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if [ "$status" -eq 1 ]; then
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echo "[OK]"
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exit 0
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else
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echo "[FAILED]"
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exit 1
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fi
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- uses: actions/upload-artifact@v3
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with:
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name: chm
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path: ${{github.workspace}}/phreeqc3.chm
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R-CMD-check:
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needs: [init]
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: macos-latest, r: 'release'}
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- {os: windows-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'oldrel-1'}
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steps:
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- uses: actions/checkout@v3
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- name: versioning
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run: ./jenkins-dist.sh -v ${{ needs.init.outputs.VER }} -r ${{ needs.init.outputs.REL }} -d ${{ needs.init.outputs.DATE }}
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- name: Setup R
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uses: r-lib/actions/setup-r@v2
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with:
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r-version: ${{ matrix.config.r }}
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http-user-agent: ${{ matrix.config.http-user-agent }}
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use-public-rspm: true
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- name: create source
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working-directory: R
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run: make VERSION=${{ needs.init.outputs.VER }} RELEASE_DATE=${{ needs.init.outputs.DATE_RFC_3339 }} source
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- name: Install dependencies
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uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: any::roxygen2, any::pkgbuild, any::rcmdcheck
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needs: roxygen2, pkgbuild, check
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working-directory: R/phreeqc
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- name: Display sessionInfo()
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run: sessionInfo()
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working-directory: R/phreeqc
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shell: Rscript {0}
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- name: roxygen2::roxygenise()
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run: roxygen2::roxygenise()
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working-directory: R/phreeqc
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shell: Rscript {0}
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- name: Check
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uses: r-lib/actions/check-r-package@v2
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with:
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working-directory: R/phreeqc
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- name: List files
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if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release'
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run: |
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pwd
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ls -lR
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find -name "*.tar.gz"
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- uses: actions/upload-artifact@v3
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if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release'
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with:
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name: cran
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path: ${{ github.workspace }}/R/phreeqc/check/phreeqc_*.tar.gz
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# r-build:
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# needs: [init]
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# runs-on: ubuntu-latest
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# steps:
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# - uses: actions/checkout@v3
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# - uses: r-lib/actions/setup-r@v2
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# with:
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# use-public-rspm: true
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# - name: install devtools
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# run: Rscript -e 'install.packages("devtools")'
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# - name: install curl
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# run: Rscript -e 'install.packages("curl")'
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# - name: versioning
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# run: ./jenkins-dist.sh -v ${{ needs.init.outputs.VER }} -r ${{ needs.init.outputs.REL }} -d ${{ needs.init.outputs.DATE }}
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# - name: setup clang
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# run: |
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# mkdir -p ~/.R
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# echo CC=clang -Qunused-arguments > ~/.R/Makevars
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# echo CXX=clang++ -Qunused-arguments >> ~/.R/Makevars
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# - name: check
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# run: cd R && make VERSION=${{ needs.init.outputs.VER }} check_built
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# - uses: actions/upload-artifact@v3
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# with:
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# name: cran
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# path: ${{github.workspace}}/R/phreeqc_*.tar.gz
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# r-valgrind:
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# needs: [r-build]
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# runs-on: ubuntu-latest
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# steps:
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# - uses: actions/checkout@v3
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# - uses: actions/download-artifact@v3
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# with:
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# name: cran
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# path: R
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# - name: Display structure of downloaded files
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# working-directory: R
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# run: ls -lR
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# - uses: r-lib/actions/setup-r@v2
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# with:
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# use-public-rspm: true
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# - name: install devtools
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# run: Rscript -e 'install.packages("devtools")'
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# - name: install curl
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# run: Rscript -e 'install.packages("curl")'
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# - name: install valgrind
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# run: sudo apt-get install -y valgrind
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# - name: setup clang
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# run: |
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# mkdir -p ~/.R
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# echo CC=clang -Qunused-arguments > ~/.R/Makevars
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# echo CXX=clang++ -Qunused-arguments >> ~/.R/Makevars
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# - name: install
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# run: cd R && R CMD INSTALL --build phreeqc_*.tar.gz
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# - name: run
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# run: cd R && R -d "valgrind --tool=memcheck --leak-check=full" --vanilla < valgrind.R 2>&1 | tee valgrind.full.out
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# - uses: actions/upload-artifact@v3
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# with:
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# name: valgrind
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# path: ${{github.workspace}}/R/valgrind.full.out
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distcheck:
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needs: [init, chm]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/download-artifact@v3
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with:
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name: chm
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- name: mv chm
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run: mv phreeqc3.chm doc/.
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- name: versioning
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run: ./jenkins-dist.sh -v ${{ needs.init.outputs.VER }} -r ${{ needs.init.outputs.REL }} -d ${{ needs.init.outputs.DATE }}
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- name: doxygen
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run: sudo apt-get install -y doxygen && cd doc && doxygen
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- name: autoreconf
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run: autoreconf -fvi
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- name: mkdir
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run: mkdir _build
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- name: configure
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working-directory: ${{github.workspace}}/_build
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run: ../configure --prefix=$(pwd)/INSTALL
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- name: make
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working-directory: ${{github.workspace}}/_build
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run: make -j2 distcheck
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- name: convert
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run: |
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sudo apt install -y dos2unix
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native="
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doc/Makefile \
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doc/examples/AccumulateLine.c \
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doc/examples/CreateIPhreeqc.c \
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doc/examples/F90ClearAccumulatedLines.f90 \
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doc/examples/F90CreateIPhreeqc.f90 \
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doc/examples/F90DestroyIPhreeqc.f90 \
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doc/examples/F90GetComponent.f90 \
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doc/examples/F90GetDumpStringLine.f90 \
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doc/examples/F90GetSelectedOutputValue.f90 \
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doc/examples/F90GetVersionString.f90 \
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doc/examples/GetComponent.c \
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doc/examples/GetDumpString.c \
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doc/examples/GetSelectedOutputValue.c \
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doc/examples/GetVersionString.c \
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doc/examples/IPhreeqc.cpp \
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doc/examples/Makefile \
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doc/examples/phreeqc.dat \
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src/CSelectedOutput.cpp \
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src/CSelectedOutput.hxx \
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src/CVar.hxx \
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src/Debug.h \
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src/ErrorReporter.hxx \
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src/IPhreeqc.cpp \
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src/IPhreeqc.f.inc \
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src/IPhreeqc.f90.inc \
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src/IPhreeqc.h \
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src/IPhreeqc.hpp \
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src/IPhreeqcCallbacks.h \
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src/IPhreeqcF.f \
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src/IPhreeqcLib.cpp \
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src/IPhreeqc_interface.F90 \
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src/IPhreeqc_interface_F.cpp \
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src/IPhreeqc_interface_F.h \
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src/Var.c \
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src/Var.h \
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src/Version.h \
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src/fimpl.h \
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src/fwrap.cpp \
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src/fwrap.h \
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src/fwrap1.cpp \
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src/fwrap2.cpp \
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src/fwrap3.cpp \
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src/fwrap4.cpp \
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src/fwrap5.cpp \
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src/fwrap6.cpp \
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src/fwrap7.cpp \
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src/fwrap8.cpp \
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src/pp_sys.cpp \
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src/thread.h \
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test/llnl.dat \
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test/phreeqc.dat \
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test2/Makefile \
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test2/wateq4f.dat \
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test5/Makefile \
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test5/phreeqc.dat \
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test5/test5.c \
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tests/main_fortran.cxx \
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tests/test_c.c \
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tests/test_cxx.cxx \
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tests/test_f90.F90 \
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unit/TestCVar.cpp \
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unit/TestCVar.h \
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unit/TestInterface.cpp \
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unit/TestInterface.h \
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unit/TestSelectedOutput.cpp \
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unit/TestSelectedOutput.h \
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unit/TestVar.cpp \
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unit/TestVar.h \
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unit/llnl.dat.old \
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unit/missing_e.dat \
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unit/phreeqc.dat.old \
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unit/unit.cpp"
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for f in ${native}; do
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unix2dos "${f}"
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done
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- name: dist-zip
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working-directory: ${{github.workspace}}/_build
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run: make dist-zip
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- name: copy
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run: cp doc/README IPhreeqc_ReadMe.txt
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- uses: actions/upload-artifact@v3
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with:
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name: readme
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path: ${{github.workspace}}/IPhreeqc_ReadMe.txt
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- uses: actions/upload-artifact@v3
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with:
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name: tarball
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path: ${{github.workspace}}/_build/*.tar.gz
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- uses: actions/upload-artifact@v3
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with:
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name: zipball
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path: ${{github.workspace}}/_build/*.zip
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# build:
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# needs: [init]
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# # The CMake configure and build commands are platform agnostic and should work equally
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# # well on Windows or Mac. You can convert this to a matrix build if you need
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# # cross-platform coverage.
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# # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix
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# runs-on: windows-2019
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# # Check all combinations of BUILD_SHARED_LIBS and BUILD_CLR_LIBS
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# strategy:
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# matrix:
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# BUILD_SHARED_LIBS: [ON, OFF]
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# BUILD_CLR_LIBS: [ON, OFF]
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# exclude:
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# - BUILD_SHARED_LIBS: OFF
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# BUILD_CLR_LIBS: ON
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# steps:
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# - uses: actions/checkout@v3
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# - name: Configure CMake
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# # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
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# # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
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# run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DBUILD_SHARED_LIBS=${{matrix.BUILD_SHARED_LIBS}} -DBUILD_CLR_LIBS=${{matrix.BUILD_CLR_LIBS}}
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# - name: Build
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# # Build your program with the given configuration
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# run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}}
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# - name: Test
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# working-directory: ${{github.workspace}}/build
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# # Execute tests defined by the CMake configuration.
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# # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
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# run: ctest -C ${{env.BUILD_TYPE}}
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