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David L Parkhurst 4d47ed13fc limit on eps_r in utilities.cpp. 
Added check when reading pitzer parameters that the right number of species is read.

git-svn-id: svn://136.177.114.72/svn_GW/phreeqc3/trunk@9390 1feff8c3-07ed-0310-ac33-dd36852eb9cd
2015-03-24 20:25:58 +00:00
PhreeqcKeywords
moved keywords to PhreeqcKeywords directory
2015-02-09 23:40:34 +00:00
advection.cpp
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
basicsubs.cpp
Added SYS("equi", count, name$, type$, moles).
2015-03-24 19:41:09 +00:00
chart_icon.gif
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
ChartHandler.cpp
updated to allow charts to stay open in phreeqci
2013-08-30 04:29:19 +00:00
ChartHandler.h
Added active_charts to ChartHandler.
2012-12-20 23:22:16 +00:00
ChartObject.cpp
Tony's change to connecting graphs
2014-02-07 23:25:04 +00:00
ChartObject.h
Added second logical in batch. First is color, second is grid.
2012-08-01 20:03:47 +00:00
cl1.cpp
removed USE_GMP
2014-12-04 00:51:01 +00:00
cl1mp.cpp
Fixed left shift operator error and null pointer error for R UBSAN check;
2014-12-03 05:19:35 +00:00
class_main.cpp
try/catch in class_main.cpp
2014-08-06 16:42:07 +00:00
CurveObject.cpp
fixed all System::Threading::Interlocked::CompareExchange and added some debugging code
2012-12-13 22:20:53 +00:00
CurveObject.h
Merged ErrorHandling 6119-6268 changes.
2012-03-06 23:42:49 +00:00
cvdense.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
cvdense.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
cvode.cpp
Fixing VS static checker warnings.
2015-02-24 20:09:29 +00:00
cvode.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
cxxKinetics.cxx
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
cxxKinetics.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
cxxMix.cxx
Use MIX_RAW in dump to read negative numbered mixes.
2014-01-27 22:04:45 +00:00
cxxMix.h
const static vopts
2012-07-17 17:12:50 +00:00
dense.cpp
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
dense.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
distribution.checklist
Copying new classes (cxx) and cpp files to src
2006-02-16 00:21:39 +00:00
distribution.mk
Made native
2014-10-30 22:00:37 +00:00
dumper.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
dumper.h
added Set_append
2013-05-31 05:39:52 +00:00
dw.cpp
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
Exchange.cxx
fixed uninitialized values
2014-07-10 20:12:14 +00:00
Exchange.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
ExchComp.cxx
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
ExchComp.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
Form1.h
Removed yellow for graphing.
2014-01-16 15:54:30 +00:00
Form1.resX
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
GasComp.cxx
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
GasComp.h
const static vopts
2012-07-17 17:12:50 +00:00
gases.cpp
Tony fixed problem with Peng Robinson SO2 (Marc Parmentier).
2015-03-11 14:59:02 +00:00
GasPhase.cxx
needed to check sum_fractions for zero
2015-03-03 18:53:02 +00:00
GasPhase.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
global_structures.h
Had timing reversed in PhreeqcRM.cpp for heterogeneous case.
2014-06-04 17:05:57 +00:00
input.cpp
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
integrate.cpp
valgrind changes/set-but-unused vars
2014-07-08 19:53:00 +00:00
inverse.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
ISolution.cxx
Removed Phreeqc_class.h.
2012-04-19 18:35:14 +00:00
ISolution.h
Default_pe is now const char *, saves some string_hsave in clear in prep.
2013-05-15 20:46:20 +00:00
ISolutionComp.cxx
Bugs fixes noted by Marco De-Vroed
2014-01-14 20:42:12 +00:00
ISolutionComp.h
updated for linux (added headers)
2012-04-20 05:18:15 +00:00
isotopes.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
kinetics.cpp
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
KineticsComp.cxx
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
KineticsComp.h
Added logic for rate limiter, but not used.
2013-04-30 16:41:40 +00:00
mainsubs.cpp
First try at constant capacitance model.
2015-03-05 18:12:53 +00:00
Makefile
latest test cases, minor changes except for .pat file, which were wrong
2014-11-03 17:38:37 +00:00
Makefile.am
updated for PhreeqcKeywords
2015-02-24 02:42:04 +00:00
Makefile.old
fixed for Keyword
2015-02-24 20:07:51 +00:00
model.cpp
First try at constant capacitance model.
2015-03-05 18:12:53 +00:00
NA.h
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
NameDouble.cxx
Initialize type in NameDouble.cpp
2014-12-30 23:25:08 +00:00
NameDouble.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
newiso.dat
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
NumKeyword.cxx
Allow negative numbers on entity mixes.
2012-07-24 18:52:15 +00:00
NumKeyword.h
Merged ErrorHandling 6119-6268 changes.
2012-03-06 23:42:49 +00:00
nvector_serial.cpp
fixed if R_SO not set
2014-07-09 19:46:08 +00:00
nvector_serial.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
nvector.cpp
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
nvector.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
parse.cpp
fixed some of the easier clang++ scan-build bugs
2014-08-05 02:51:35 +00:00
Parser.cxx
fixed some of the easier clang++ scan-build bugs
2014-08-05 02:51:35 +00:00
Parser.h
has _DEBUG #defines for extended ascii/ANSI character set to avoid assert.
2013-02-07 16:08:13 +00:00
PBasic.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
PBasic.h
Roughed in surface area calculation by DeClercq (sa_declercq for now).
2015-02-03 15:58:09 +00:00
phast.xsd
eol
2009-12-03 01:06:34 +00:00
phqalloc.cpp
memset not used for NDEBUG
2014-07-30 15:22:15 +00:00
phqalloc.h
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
Phreeqc.cpp
Added logic to run only one step in RunCells
2014-09-12 22:11:27 +00:00
phreeqc.dat
Copying new classes (cxx) and cpp files to src
2006-02-16 00:21:39 +00:00
phreeqc.distribution.checklist
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
Phreeqc.h
Added SYS("equi", count, name$, type$, moles).
2015-03-24 19:41:09 +00:00
phreeqc.Makefile
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
phreex.ico
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
PHRQ_base.cxx
first pass @ removing std::cerr, std::cout, exit, stderr, stdout from R version.
2014-04-05 04:14:16 +00:00
PHRQ_base.h
roughed in cxxPressure class. A lot more to do.
2011-11-30 16:50:52 +00:00
PHRQ_io_output.cpp
moved Phreeqc methods process_file_names, open_input_stream,
2014-05-02 03:36:26 +00:00
PHRQ_io.cpp
fixed some of the easier clang++ scan-build bugs
2014-08-05 05:51:47 +00:00
PHRQ_io.h
all tests passing for one selected_output file;
2013-08-12 22:24:18 +00:00
phrqtype.h
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
pitzer_structures.cpp
limit on eps_r in utilities.cpp.
2015-03-24 20:25:58 +00:00
pitzer.cpp
Changed variable from max to max_cells.
2014-07-11 20:05:09 +00:00
PPassemblage.cxx
added initialization code for cxxPPassemblage
2015-01-06 06:20:24 +00:00
PPassemblage.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
PPassemblageComp.cxx
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
PPassemblageComp.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
prep.cpp
Tony fixed problem with Peng Robinson SO2 (Marc Parmentier).
2015-03-11 14:59:02 +00:00
Pressure.cxx
Changed read _modify to warning if entity not found.
2014-02-06 18:28:24 +00:00
Pressure.h
Changed read _modify to warning if entity not found.
2014-02-06 18:28:24 +00:00
print.cpp
First try at constant capacitance model.
2015-03-05 18:12:53 +00:00
Reaction.cxx
const static vopts
2012-07-17 17:12:50 +00:00
Reaction.h
const static vopts
2012-07-17 17:12:50 +00:00
read.cpp
First try at constant capacitance model.
2015-03-05 18:12:53 +00:00
ReadClass.cxx
Added logic to run only one step in RunCells
2014-09-12 22:11:27 +00:00
readtr.cpp
Changed variable from max to max_cells.
2014-07-11 20:05:09 +00:00
runner.cpp
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
runner.h
added Setters for time params
2013-03-07 05:42:24 +00:00
SelectedOutput.cpp
changed EOL to native
2014-01-23 01:31:19 +00:00
SelectedOutput.h
changed EOL to native
2014-01-23 01:31:19 +00:00
sit.cpp
fixed some of the easier clang++ scan-build bugs
2014-08-05 05:51:47 +00:00
smalldense.cpp
fixed if R_SO not set
2014-07-09 19:46:08 +00:00
smalldense.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
Solution.cxx
Working with gas phase.
2014-07-29 17:25:52 +00:00
Solution.h
Roughing in mcd capability.
2014-02-28 21:29:53 +00:00
SolutionIsotope.cxx
const static vopts
2012-07-17 17:12:50 +00:00
SolutionIsotope.h
const static vopts
2012-07-17 17:12:50 +00:00
spread.cpp
fixed some of the easier clang++ scan-build bugs
2014-08-05 05:51:47 +00:00
SS.cxx
LDBLEs
2013-03-29 17:42:27 +00:00
SS.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SSassemblage.cxx
more testing of copy operator.
2013-02-11 19:04:35 +00:00
SSassemblage.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SScomp.cxx
LDBLE for SScomp
2013-04-03 22:06:01 +00:00
SScomp.h
LDBLE for SScomp
2013-04-03 22:06:01 +00:00
step.cpp
First try at constant capacitance model.
2015-03-05 18:12:53 +00:00
StorageBin.cxx
Moved uz_bin to workers to avoid possible data conflicts.
2014-04-15 22:55:59 +00:00
StorageBin.h
Moved uz_bin to workers to avoid possible data conflicts.
2014-04-15 22:55:59 +00:00
StorageBinList.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
StorageBinList.h
added some const and added cell for use in phreeqci
2013-05-29 23:38:00 +00:00
structures.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
sundialsmath.cpp
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
sundialsmath.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
sundialstypes.h
added LICENSE to cvode files
2014-05-08 02:23:14 +00:00
Surface.cxx
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
Surface.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SurfaceCharge.cxx
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SurfaceCharge.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SurfaceComp.cxx
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
SurfaceComp.h
PHREEQC should now have no USE_MPI
2012-10-29 23:16:27 +00:00
System.cxx
copy/paste error for surface in totalize system.
2014-08-04 14:44:08 +00:00
System.h
Removed Phreeqc_class.h.
2012-04-19 18:35:14 +00:00
tally.cpp
Fixing VS static checker warnings.
2015-02-24 19:22:09 +00:00
Temperature.cxx
Changed read _modify to warning if entity not found.
2014-02-06 18:28:24 +00:00
Temperature.h
Changed read _modify to warning if entity not found.
2014-02-06 18:28:24 +00:00
test.xml
eol
2009-12-03 01:06:34 +00:00
tidy.cpp
default initial solution for the reaction calculation was not defined properly when using only
2015-03-16 18:46:40 +00:00
transport.cpp
removed set but not used variables using gcc 4.8.2[-Wunused-but-set-variable]
2014-07-09 01:46:43 +00:00
Use.cpp
Linux Makefile
2012-01-11 16:46:37 +00:00
Use.h
Merged ErrorHandling 6119-6268 changes.
2012-03-06 23:42:49 +00:00
UserPunch.cpp
Fixed left shift operator error and null pointer error for R UBSAN check;
2014-12-03 05:19:35 +00:00
UserPunch.h
changed EOL to native
2014-01-23 01:31:19 +00:00
utilities.cpp
limit on eps_r in utilities.cpp.
2015-03-24 20:25:58 +00:00
Utils.cxx
LDBLEs
2013-03-29 17:42:27 +00:00
Utils.h
LDBLEs
2013-03-29 17:42:27 +00:00
ZedGraph.dll
moved phreeqc files into src
2013-01-10 06:04:12 +00:00
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40 MiB
Languages
C++ 81.6%
Makefile 9.2%
C 4.8%
Fortran 1.8%
R 1%
Other 1.3%