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b4a42445 Merge commit '1ebe8191c254ea7a50f20876ef1bf21450f7887a' 1ebe8191 Squashed 'phreeqcpp/' changes from 87919a0..7284fed git-subtree-dir: src git-subtree-split: b4a424453b03269c6af9be2fd5f0d7a7e63b5eb4
838 lines
23 KiB
C++
838 lines
23 KiB
C++
// Surface.cxx: implementation of the cxxSurface class.
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//
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//////////////////////////////////////////////////////////////////////
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#ifdef _DEBUG
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#pragma warning(disable : 4786) // disable truncation warning (Only used by debugger)
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#endif
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#include <cassert> // assert
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#include <algorithm> // std::sort
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#include "Utils.h" // define first
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#include "Phreeqc.h"
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#include "Surface.h"
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#include "cxxMix.h"
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#include "phqalloc.h"
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#if defined(PHREEQCI_GUI)
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#ifdef _DEBUG
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#define new DEBUG_NEW
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#undef THIS_FILE
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static char THIS_FILE[] = __FILE__;
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#endif
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#endif
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//////////////////////////////////////////////////////////////////////
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// Construction/Destruction
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//////////////////////////////////////////////////////////////////////
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cxxSurface::cxxSurface(PHRQ_io *io)
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//
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// default constructor for cxxSurface
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//
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: cxxNumKeyword(io)
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{
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new_def = false;
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tidied = false;
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type = DDL;
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dl_type = NO_DL;
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sites_units = SITES_ABSOLUTE;
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only_counter_ions = false;
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correct_D = false;
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thickness = 1e-8;
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debye_lengths = 0.0;
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calc_DDL_viscosity = false;
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DDL_viscosity = 1.0;
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DDL_limit = 0.8;
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transport = false;
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solution_equilibria = false;
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n_solution = -999;
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}
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cxxSurface::cxxSurface(std::map < int, cxxSurface > &entities,
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cxxMix & mix, int l_n_user, PHRQ_io *io):
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cxxNumKeyword(io)
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{
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this->n_user = this->n_user_end = l_n_user;
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this->new_def = false;
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this->tidied = true;
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type = DDL;
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dl_type = NO_DL;
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sites_units = SITES_ABSOLUTE;
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only_counter_ions = false;
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correct_D = false;
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thickness = 1e-8;
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debye_lengths = 0.0;
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calc_DDL_viscosity = false;
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DDL_viscosity = 1.0;
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DDL_limit = 0.8;
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transport = false;
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solution_equilibria = false;
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n_solution = -999;
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//
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// Mix surfaces
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//
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const std::map < int, LDBLE >&mixcomps = mix.Get_mixComps();
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std::map < int, LDBLE >::const_iterator it;
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for (it = mixcomps.begin(); it != mixcomps.end(); it++)
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{
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if (entities.find(it->first) != entities.end())
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{
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this->add(entities.find(it->first)->second, it->second);
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}
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}
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}
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cxxSurface::~cxxSurface()
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{
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}
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bool
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cxxSurface::Get_related_phases() const
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{
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for (size_t i = 0; i != this->surface_comps.size(); i++)
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{
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if (this->surface_comps[i].Get_phase_name().size() == 0)
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continue;
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return (true);
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}
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return (false);
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}
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bool
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cxxSurface::Get_related_rate() const
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{
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for (size_t i = 0; i != this->surface_comps.size(); i++)
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{
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if (this->surface_comps[i].Get_rate_name().size() == 0)
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continue;
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return (true);
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}
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return (false);
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}
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void
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cxxSurface::dump_raw(std::ostream & s_oss, unsigned int indent, int *n_out) const
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{
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unsigned int i;
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s_oss.precision(DBL_DIG - 1);
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std::string indent0(""), indent1(""), indent2("");
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for (i = 0; i < indent; ++i)
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indent0.append(Utilities::INDENT);
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for (i = 0; i < indent + 1; ++i)
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indent1.append(Utilities::INDENT);
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for (i = 0; i < indent + 2; ++i)
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indent2.append(Utilities::INDENT);
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// Surface element and attributes
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s_oss << indent0;
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int n_user_local = (n_out != NULL) ? *n_out : this->n_user;
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s_oss << "SURFACE_RAW " << n_user_local << " " << this->description << "\n";
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s_oss << indent1 << "# SURFACE_MODIFY candidate identifiers #\n";
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s_oss << indent1;
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s_oss << "-type " << this->type << "\n";
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s_oss << indent1;
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s_oss << "-dl_type " << this->dl_type << "\n";
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s_oss << indent1;
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s_oss << "-only_counter_ions " << this->only_counter_ions << "\n";
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s_oss << indent1;
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s_oss << "-correct_D " << this->correct_D << "\n";
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s_oss << indent1;
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s_oss << "-thickness " << this->thickness << "\n";
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s_oss << indent1;
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s_oss << "-debye_lengths " << this->debye_lengths << "\n";
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s_oss << indent1;
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s_oss << "-DDL_viscosity " << this->DDL_viscosity << "\n";
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s_oss << indent1;
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s_oss << "-DDL_limit " << this->DDL_limit << "\n";
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// surfaceComps
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for (size_t i = 0; i != this->surface_comps.size(); i++)
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{
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const cxxSurfaceComp * comp_ptr = &(this->surface_comps[i]);
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s_oss << indent1;
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s_oss << "-component " << comp_ptr->Get_formula() << "\n";
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comp_ptr->dump_raw(s_oss, indent + 2);
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}
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// surface charge
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for (size_t i = 0; i != this->surface_charges.size(); i++)
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{
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const cxxSurfaceCharge * charge_ptr = &(this->surface_charges[i]);
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s_oss << indent1;
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s_oss << "-charge_component " << charge_ptr->Get_name() << "\n";
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charge_ptr->dump_raw(s_oss, indent + 2);
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}
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s_oss << indent1 << "# SURFACE_MODIFY candidates with new_def=true #\n";
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s_oss << indent1;
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s_oss << "-new_def " << this->new_def << "\n";
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s_oss << indent1;
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s_oss << "-tidied " << this->tidied << "\n";
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s_oss << indent1;
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s_oss << "-sites_units " << this->sites_units << "\n";
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s_oss << indent1;
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s_oss << "-solution_equilibria " << this->solution_equilibria << "\n";
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s_oss << indent1;
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s_oss << "-n_solution " << this->n_solution << "\n";
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s_oss << indent1 << "# Surface workspace variables #\n";
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s_oss << indent1;
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s_oss << "-transport " << this->transport << "\n";
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s_oss << indent1;
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s_oss << "-totals " << "\n";
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this->totals.dump_raw(s_oss, indent + 2);
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return;
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}
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void
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cxxSurface::read_raw(CParser & parser, bool check)
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{
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int i = 0;
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std::istream::pos_type ptr;
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std::istream::pos_type next_char;
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std::string token;
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bool useLastLine(false);
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// Read surface number and description
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this->read_number_description(parser);
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this->Set_new_def(false);
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this->Set_tidied(true);
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bool only_counter_ions_defined(false);
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//bool correct_D_defined(false);
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bool thickness_defined(false);
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bool type_defined(false);
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bool dl_type_defined(false);
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bool sites_units_defined(false);
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bool debye_lengths_defined(false);
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bool DDL_viscosity_defined(false);
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bool DDL_limit_defined(false);
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bool transport_defined(false);
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for (;;)
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{
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int opt;
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if (useLastLine == false)
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{
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opt = parser.get_option(vopts, next_char);
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}
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else
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{
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opt = parser.getOptionFromLastLine(vopts, next_char, true);
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}
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useLastLine = false;
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switch (opt)
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{
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case CParser::OPT_EOF:
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break;
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case CParser::OPT_KEYWORD:
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break;
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case CParser::OPT_DEFAULT:
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case CParser::OPT_ERROR:
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opt = CParser::OPT_EOF;
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parser.error_msg("Unknown input in SURFACE keyword.",
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PHRQ_io::OT_CONTINUE);
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parser.error_msg(parser.line().c_str(), PHRQ_io::OT_CONTINUE);
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break;
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case 0: // diffuse_layer
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parser.incr_input_error();
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parser.error_msg("Diffuse layer is obsolete, use -type.",
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PHRQ_io::OT_CONTINUE);
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break;
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case 1: // edl
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parser.incr_input_error();
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parser.error_msg("-edl is obsolete, use -type.",
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PHRQ_io::OT_CONTINUE);
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break;
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case 2: // only_counter_ions
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if (!(parser.get_iss() >> this->only_counter_ions))
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{
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this->only_counter_ions = false;
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parser.incr_input_error();
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parser.
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error_msg("Expected boolean value for only_counter_ions.",
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PHRQ_io::OT_CONTINUE);
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}
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only_counter_ions_defined = true;
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break;
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case 3: // donnan
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parser.incr_input_error();
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parser.error_msg("-Donnan is obsolete, use -dl_type.",
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PHRQ_io::OT_CONTINUE);
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break;
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case 4: // thickness
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if (!(parser.get_iss() >> this->thickness))
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{
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this->thickness = 0.0;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for thickness.",
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PHRQ_io::OT_CONTINUE);
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}
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thickness_defined = true;
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break;
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case 5: // component
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{
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std::string str;
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if (!(parser.get_iss() >> str))
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{
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parser.incr_input_error();
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parser.error_msg("Expected string value for component name.",
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PHRQ_io::OT_CONTINUE);
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}
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else
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{
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cxxSurfaceComp temp_comp(this->io);
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temp_comp.Set_formula(str.c_str());
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cxxSurfaceComp *comp_ptr = this->Find_comp(str);
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if (comp_ptr)
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{
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temp_comp = *comp_ptr;
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}
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temp_comp.read_raw(parser, check);
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if (comp_ptr)
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{
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for (size_t j = 0; j < this->surface_comps.size(); j++)
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{
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if (Utilities::strcmp_nocase(this->surface_comps[j].Get_formula().c_str(), str.c_str()) == 0)
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{
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this->surface_comps[j] = temp_comp;
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}
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}
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}
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else
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{
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this->surface_comps.push_back(temp_comp);
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}
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useLastLine = true;
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}
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}
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break;
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case 6: // charge_component
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{
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std::string str;
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if (!(parser.get_iss() >> str))
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{
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parser.incr_input_error();
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parser.error_msg("Expected string value for charge name.",
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PHRQ_io::OT_CONTINUE);
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}
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else
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{
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cxxSurfaceCharge temp_charge(this->io);
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temp_charge.Set_name(str.c_str());
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cxxSurfaceCharge *charge_ptr = this->Find_charge(str);
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if (charge_ptr)
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{
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temp_charge = *charge_ptr;
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}
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temp_charge.read_raw(parser, check);
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if (charge_ptr)
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{
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for (size_t j = 0; j < this->surface_charges.size(); j++)
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{
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if (Utilities::strcmp_nocase(this->surface_charges[j].Get_name().c_str(), str.c_str()) == 0)
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{
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this->surface_charges[j] = temp_charge;
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}
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}
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}
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else
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{
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this->surface_charges.push_back(temp_charge);
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}
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useLastLine = true;
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}
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}
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useLastLine = true;
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break;
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case 7: // type
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i = 0;
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if (!(parser.get_iss() >> i))
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{
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this->type = NO_EDL;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for type.",
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PHRQ_io::OT_CONTINUE);
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}
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this->type = (SURFACE_TYPE) i;
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type_defined = true;
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break;
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case 8: // dl_type
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i = 0;
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if (!(parser.get_iss() >> i))
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{
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this->dl_type = NO_DL;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for dl_type.",
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PHRQ_io::OT_CONTINUE);
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}
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this->dl_type = (DIFFUSE_LAYER_TYPE) i;
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dl_type_defined = true;
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break;
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case 9: // sites_units
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i = 0;
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if (!(parser.get_iss() >> i))
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{
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this->sites_units = SITES_ABSOLUTE;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for sites_units.",
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PHRQ_io::OT_CONTINUE);
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}
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this->sites_units = (SITES_UNITS) i;
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sites_units_defined = true;
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break;
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case 10: // debye_lengths
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if (!(parser.get_iss() >> this->debye_lengths))
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{
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this->debye_lengths = 0.0;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for debye_lengths.",
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PHRQ_io::OT_CONTINUE);
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}
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debye_lengths_defined = true;
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break;
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case 11: // DDL_viscosity
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if (!(parser.get_iss() >> this->DDL_viscosity))
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{
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this->DDL_viscosity = 1.0;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for DDL_viscosity.",
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PHRQ_io::OT_CONTINUE);
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}
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DDL_viscosity_defined = true;
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break;
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case 12: // DDL_limit
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if (!(parser.get_iss() >> this->DDL_limit))
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{
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this->DDL_limit = 0.0;
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parser.incr_input_error();
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parser.error_msg("Expected numeric value for DDL_limit.",
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PHRQ_io::OT_CONTINUE);
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}
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DDL_limit_defined = true;
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break;
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case 13: // transport
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if (!(parser.get_iss() >> this->transport))
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{
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this->transport = false;
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parser.incr_input_error();
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parser.error_msg("Expected boolean value for transport.",
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PHRQ_io::OT_CONTINUE);
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}
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transport_defined = true;
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break;
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case 14: // new_def
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if (!(parser.get_iss() >> this->new_def))
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{
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this->new_def = false;
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parser.incr_input_error();
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parser.error_msg("Expected boolean value for new_def.",
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PHRQ_io::OT_CONTINUE);
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}
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break;
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case 15: // new_def
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if (!(parser.get_iss() >> this->solution_equilibria))
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{
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this->solution_equilibria = false;
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parser.incr_input_error();
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parser.error_msg("Expected boolean value for solution_equilibria.",
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PHRQ_io::OT_CONTINUE);
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}
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break;
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case 16: // n_solution
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if (!(parser.get_iss() >> this->n_solution))
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{
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this->n_solution = -999;
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parser.incr_input_error();
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parser.error_msg("Expected integer value for n_solution.",
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PHRQ_io::OT_CONTINUE);
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}
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break;
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case 17: // totals
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if (this->totals.read_raw(parser, next_char) != CParser::PARSER_OK)
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{
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parser.incr_input_error();
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parser.
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error_msg
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("Expected element name and molality for Surface totals.",
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PHRQ_io::OT_CONTINUE);
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}
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break;
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case 18: // tidied
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if (!(parser.get_iss() >> this->tidied))
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{
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this->tidied = false;
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parser.incr_input_error();
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parser.error_msg("Expected boolean value for tidied.",
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PHRQ_io::OT_CONTINUE);
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}
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break;
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case 19: // correct_D
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if (!(parser.get_iss() >> this->correct_D))
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{
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this->correct_D = false;
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parser.incr_input_error();
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parser.
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error_msg("Expected boolean value for correct_D.",
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PHRQ_io::OT_CONTINUE);
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}
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//correct_D_defined = true;
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break;
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}
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if (opt == CParser::OPT_EOF || opt == CParser::OPT_KEYWORD)
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break;
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}
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if (check)
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{
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// members that must be defined
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if (only_counter_ions_defined == false)
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{
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parser.incr_input_error();
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parser.
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error_msg("Only_counter_ions not defined for SURFACE_RAW input.",
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PHRQ_io::OT_CONTINUE);
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}
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//if (correct_D_defined == false)
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//{
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// parser.incr_input_error();
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// parser.
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// error_msg("correct_D not defined for SURFACE_RAW input.",
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// PHRQ_io::OT_CONTINUE);
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//}
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if (thickness_defined == false)
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{
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parser.incr_input_error();
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parser.error_msg("Thickness not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (type_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("Surface type not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (dl_type_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("Dl_type not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (sites_units_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("Sites_units not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (debye_lengths_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("Debye_lengths not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (DDL_viscosity_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("DDL_viscosity not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (DDL_limit_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("DDL_limit not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
if (transport_defined == false)
|
|
{
|
|
parser.incr_input_error();
|
|
parser.error_msg("Transport not defined for SURFACE_RAW input.",
|
|
PHRQ_io::OT_CONTINUE);
|
|
}
|
|
}
|
|
this->Sort_comps();
|
|
}
|
|
|
|
void
|
|
cxxSurface::totalize()
|
|
{
|
|
this->totals.clear();
|
|
// component structures
|
|
for (size_t i = 0; i != this->surface_comps.size(); i++)
|
|
{
|
|
cxxSurfaceComp * comp_ptr = &(this->surface_comps[i]);
|
|
this->totals.add_extensive(comp_ptr->Get_totals(), 1.0);
|
|
this->totals.add("Charge", comp_ptr->Get_charge_balance());
|
|
}
|
|
return;
|
|
}
|
|
void
|
|
cxxSurface::add(const cxxSurface & addee_in, LDBLE extensive)
|
|
//
|
|
// Add surface to "this" surface
|
|
//
|
|
{
|
|
cxxSurface addee = addee_in;
|
|
if (extensive == 0.0)
|
|
return;
|
|
if (this->surface_comps.size() == 0)
|
|
{
|
|
this->only_counter_ions = addee.only_counter_ions;
|
|
this->correct_D = addee.correct_D;
|
|
this->dl_type = addee.dl_type;
|
|
this->type = addee.type;
|
|
this->sites_units = addee.sites_units;
|
|
this->thickness = addee.thickness;
|
|
this->debye_lengths = addee.debye_lengths;
|
|
this->DDL_viscosity = addee.DDL_viscosity;
|
|
this->DDL_limit = addee.DDL_limit;
|
|
this->solution_equilibria = addee.solution_equilibria;
|
|
this->n_solution = addee.n_solution;
|
|
this->transport = addee.transport;
|
|
}
|
|
|
|
for (size_t i_add = 0; i_add < addee.Get_surface_comps().size(); i_add++)
|
|
{
|
|
const cxxSurfaceComp & comp_add_ptr = addee.Get_surface_comps()[i_add];
|
|
size_t i_this;
|
|
for (i_this = 0; i_this < this->surface_comps.size(); i_this++)
|
|
{
|
|
cxxSurfaceComp & comp_this_ptr = this->surface_comps[i_this];
|
|
if(comp_add_ptr.Get_formula() == comp_this_ptr.Get_formula())
|
|
{
|
|
comp_this_ptr.add(addee.surface_comps[i_add], extensive);
|
|
break;
|
|
}
|
|
}
|
|
if (i_this == this->surface_comps.size())
|
|
{
|
|
|
|
cxxSurfaceComp entity = comp_add_ptr;
|
|
entity.multiply(extensive);
|
|
this->surface_comps.push_back(entity);
|
|
}
|
|
}
|
|
for (size_t i_add = 0; i_add < addee.Get_surface_charges().size(); i_add++)
|
|
{
|
|
const cxxSurfaceCharge & charge_add_ptr = addee.Get_surface_charges()[i_add];
|
|
|
|
size_t i_this;
|
|
for (i_this = 0; i_this < this->surface_charges.size(); i_this++)
|
|
{
|
|
cxxSurfaceCharge & charge_this_ptr = this->Get_surface_charges()[i_this];
|
|
if(charge_add_ptr.Get_name() == charge_this_ptr.Get_name())
|
|
{
|
|
charge_this_ptr.add(addee.surface_charges[i_add], extensive);
|
|
break;
|
|
}
|
|
}
|
|
if (i_this == this->surface_charges.size())
|
|
{
|
|
|
|
cxxSurfaceCharge entity = charge_add_ptr;
|
|
entity.multiply(extensive);
|
|
this->surface_charges.push_back(entity);
|
|
}
|
|
}
|
|
}
|
|
|
|
void
|
|
cxxSurface::multiply(LDBLE extensive)
|
|
//
|
|
// Add surface to "this" surface
|
|
//
|
|
{
|
|
|
|
for (size_t i = 0; i < this->surface_comps.size(); i++)
|
|
{
|
|
cxxSurfaceComp *comp_ptr = &(this->surface_comps[i]);
|
|
comp_ptr->multiply(extensive);
|
|
}
|
|
for (size_t i = 0; i < this->surface_charges.size(); i++)
|
|
{
|
|
cxxSurfaceCharge *charge_ptr = &(this->surface_charges[i]);
|
|
charge_ptr->multiply(extensive);
|
|
}
|
|
}
|
|
cxxSurfaceComp * cxxSurface::
|
|
Find_comp(std::string str)
|
|
{
|
|
for (size_t i = 0; i < this->surface_comps.size(); i++)
|
|
{
|
|
if (Utilities::strcmp_nocase(str.c_str(), this->surface_comps[i].Get_formula().c_str()) == 0)
|
|
return &(this->surface_comps[i]);
|
|
}
|
|
return NULL;
|
|
}
|
|
|
|
cxxSurfaceCharge * cxxSurface::
|
|
Find_charge(std::string str)
|
|
{
|
|
for (size_t i = 0; i < this->surface_charges.size(); i++)
|
|
{
|
|
if (Utilities::strcmp_nocase(str.c_str(), this->surface_charges[i].Get_name().c_str()) == 0)
|
|
return &(this->surface_charges[i]);
|
|
}
|
|
return NULL;
|
|
}
|
|
const cxxSurfaceCharge * cxxSurface::
|
|
Find_charge(std::string str)const
|
|
{
|
|
for (size_t i = 0; i < this->surface_charges.size(); i++)
|
|
{
|
|
if (Utilities::strcmp_nocase(str.c_str(), this->surface_charges[i].Get_name().c_str()) == 0)
|
|
return &(this->surface_charges[i]);
|
|
}
|
|
return NULL;
|
|
}
|
|
void cxxSurface::
|
|
Sort_comps(void)
|
|
{
|
|
// sort comps
|
|
{
|
|
std::map<std::string, cxxSurfaceComp> comp_map;
|
|
for (size_t i = 0; i < this->surface_comps.size(); i++)
|
|
{
|
|
comp_map[this->surface_comps[i].Get_formula()] = this->surface_comps[i];
|
|
}
|
|
this->surface_comps.clear();
|
|
std::map<std::string, cxxSurfaceComp>::iterator it;
|
|
for (it = comp_map.begin(); it != comp_map.end(); it++)
|
|
{
|
|
this->surface_comps.push_back(it->second);
|
|
}
|
|
}
|
|
|
|
// sort charge too
|
|
{
|
|
std::map<std::string, cxxSurfaceCharge> charge_map;
|
|
for (size_t i = 0; i < this->surface_charges.size(); i++)
|
|
{
|
|
charge_map[this->surface_charges[i].Get_name()] = this->surface_charges[i];
|
|
}
|
|
this->surface_charges.clear();
|
|
std::map<std::string, cxxSurfaceCharge>::iterator it;
|
|
for (it = charge_map.begin(); it != charge_map.end(); it++)
|
|
{
|
|
this->surface_charges.push_back(it->second);
|
|
}
|
|
}
|
|
}
|
|
/* ---------------------------------------------------------------------- */
|
|
void
|
|
cxxSurface::Serialize(Dictionary & dictionary, std::vector < int >&ints,
|
|
std::vector < double >&doubles)
|
|
/* ---------------------------------------------------------------------- */
|
|
{
|
|
|
|
ints.push_back(this->n_user);
|
|
ints.push_back((int) this->surface_comps.size());
|
|
{
|
|
for (size_t i = 0; i < this->surface_comps.size(); i++)
|
|
{
|
|
surface_comps[i].Serialize(dictionary, ints, doubles);
|
|
}
|
|
}
|
|
ints.push_back((int) this->surface_charges.size());
|
|
{
|
|
for (size_t i = 0; i < this->surface_charges.size(); i++)
|
|
{
|
|
surface_charges[i].Serialize(dictionary, ints, doubles);
|
|
}
|
|
}
|
|
ints.push_back(this->new_def ? 1 : 0);
|
|
ints.push_back(this->tidied ? 1 : 0);
|
|
ints.push_back((int) this->type);
|
|
ints.push_back((int) this->dl_type);
|
|
ints.push_back((int) this->sites_units);
|
|
ints.push_back(this->only_counter_ions ? 1 : 0);
|
|
doubles.push_back(this->thickness);
|
|
doubles.push_back(this->debye_lengths);
|
|
doubles.push_back(this->DDL_viscosity);
|
|
doubles.push_back(this->DDL_limit);
|
|
ints.push_back(this->correct_D ? 1 : 0);
|
|
ints.push_back(this->transport ? 1 : 0);
|
|
this->totals.Serialize(dictionary, ints, doubles);
|
|
ints.push_back(this->solution_equilibria ? 1 : 0);
|
|
ints.push_back((int) this->n_solution);
|
|
|
|
}
|
|
|
|
/* ---------------------------------------------------------------------- */
|
|
void
|
|
cxxSurface::Deserialize(Dictionary & dictionary, std::vector < int >&ints,
|
|
std::vector < double >&doubles, int &ii, int &dd)
|
|
/* ---------------------------------------------------------------------- */
|
|
{
|
|
this->n_user = ints[ii++];
|
|
this->n_user_end = this->n_user;
|
|
this->description = " ";
|
|
{
|
|
int count = ints[ii++];
|
|
this->surface_comps.clear();
|
|
for (int n = 0; n < count; n++)
|
|
{
|
|
cxxSurfaceComp sc(this->io);
|
|
sc.Deserialize(dictionary, ints, doubles, ii, dd);
|
|
this->surface_comps.push_back(sc);
|
|
}
|
|
}
|
|
{
|
|
int count = ints[ii++];
|
|
this->surface_charges.clear();
|
|
for (int n = 0; n < count; n++)
|
|
{
|
|
cxxSurfaceCharge sc(this->io);
|
|
sc.Deserialize(dictionary, ints, doubles, ii, dd);
|
|
this->surface_charges.push_back(sc);
|
|
}
|
|
}
|
|
this->new_def = (ints[ii++] != 0);
|
|
this->tidied = (ints[ii++] != 0);
|
|
this->type = (SURFACE_TYPE) ints[ii++];
|
|
this->dl_type = (DIFFUSE_LAYER_TYPE) ints[ii++];
|
|
this->sites_units = (SITES_UNITS) ints[ii++];
|
|
this->only_counter_ions = (ints[ii++] != 0);
|
|
this->thickness = doubles[dd++];
|
|
this->debye_lengths = doubles[dd++];
|
|
this->DDL_viscosity = doubles[dd++];
|
|
this->DDL_limit = doubles[dd++];
|
|
this->correct_D = (ints[ii++] != 0);
|
|
this->transport = (ints[ii++] != 0);
|
|
this->totals.Deserialize(dictionary, ints, doubles, ii, dd);
|
|
this->solution_equilibria = (ints[ii++] != 0);
|
|
this->n_solution = ints[ii++];
|
|
|
|
}
|
|
|
|
|
|
const std::vector< std::string >::value_type temp_vopts[] = {
|
|
std::vector< std::string >::value_type("diffuse_layer"), // 0
|
|
std::vector< std::string >::value_type("edl"), // 1
|
|
std::vector< std::string >::value_type("only_counter_ions"), // 2
|
|
std::vector< std::string >::value_type("donnan"), // 3
|
|
std::vector< std::string >::value_type("thickness"), // 4
|
|
std::vector< std::string >::value_type("component"), // 5
|
|
std::vector< std::string >::value_type("charge_component"), // 6
|
|
std::vector< std::string >::value_type("type "), // 7
|
|
std::vector< std::string >::value_type("dl_type"), // 8
|
|
std::vector< std::string >::value_type("sites_units"), // 9
|
|
std::vector< std::string >::value_type("debye_lengths"), // 10
|
|
std::vector< std::string >::value_type("ddl_viscosity"), // 11
|
|
std::vector< std::string >::value_type("ddl_limit"), // 12
|
|
std::vector< std::string >::value_type("transport"), // 13
|
|
std::vector< std::string >::value_type("new_def"), // 14
|
|
std::vector< std::string >::value_type("solution_equilibria"), // 15
|
|
std::vector< std::string >::value_type("n_solution"), // 16
|
|
std::vector< std::string >::value_type("totals"), // 17
|
|
std::vector< std::string >::value_type("tidied"), // 18
|
|
std::vector< std::string >::value_type("correct_d") // 19
|
|
};
|
|
const std::vector< std::string > cxxSurface::vopts(temp_vopts, temp_vopts + sizeof temp_vopts / sizeof temp_vopts[0]);
|