chore: Extract benchmark data during CMake configuration
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Max Lübke
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Readme.md
10
Readme.md
@ -6,11 +6,11 @@ This repository contains input data from POET simulations used in the
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NAAICE project and is simulated with the latest version of tug with
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heterogeneous alphas.
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Benchmarks (grids, timestep, file paths, etc) are defined in the
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header file `eval/bench_defs.hpp.in`. The data used by the three
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benchmarks `barite_200`, `barite_large` and `surfex` are in the
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corresponding subdirectories of `eval`, as `tar.gz`. Remember to
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unpack them before running the executable!
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Benchmarks (grids, timestep, file paths, etc) are defined in the header file
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`eval/bench_defs.hpp.in`. The data used by the three benchmarks `barite_200`,
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`barite_large` and `surfex` are in the corresponding subdirectories of `eval`,
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as `tar.gz`. Remember to unpack them before running the executable into the
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same directory of the executable. Or just let CMake do it for you.
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To write the results to file, set the `BENCH_OUTPUT` environmental
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variable, e.g. `BENCH_OUTPUT=1 ./bench`. The resulting fields are
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@ -1,5 +1,31 @@
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set(BARITE_200_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/barite_200")
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set(BARITE_LARGE_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/barite_large")
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set(SURFEX_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/surfex")
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set(benchmarks
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"${CMAKE_CURRENT_SOURCE_DIR}/barite_200"
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"${CMAKE_CURRENT_SOURCE_DIR}/barite_large"
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"${CMAKE_CURRENT_SOURCE_DIR}/surfex"
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)
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foreach(benchmark ${benchmarks})
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# find tar.gz files
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file(GLOB_RECURSE tar_files "${benchmark}/*.tar.gz")
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foreach(tar_file ${tar_files})
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# get the name of the tar file
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get_filename_component(tar_name ${tar_file} NAME_WE)
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# get the name of the directory
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get_filename_component(dir_name ${tar_file} DIRECTORY)
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get_filename_component(dir_name ${dir_name} NAME)
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# create the directory
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message("Extracting ${tar_name} to ${dir_name}")
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file(MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/${dir_name}")
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# extract the tar file
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execute_process(
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COMMAND tar -xzf ${tar_file}
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WORKING_DIRECTORY "${CMAKE_BINARY_DIR}/${dir_name}"
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)
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endforeach()
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endforeach()
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set(BARITE_200_BENCH "${CMAKE_BINARY_DIR}/barite_200")
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set(BARITE_LARGE_BENCH "${CMAKE_BINARY_DIR}/barite_large")
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set(SURFEX_BENCH "${CMAKE_BINARY_DIR}/surfex")
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configure_file(bench_defs.hpp.in bench_defs.hpp)
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@ -1,9 +1,9 @@
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#ifndef _BENCH_DEFS_HPP
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#define _BENCH_DEFS_HPP
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#include <iostream>
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#include <string>
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#include <vector>
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#include <iostream>
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struct init_boundary {
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const std::vector<int> north_const;
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@ -31,7 +31,6 @@ struct bench_input {
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const int iterations;
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};
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static const std::vector<int> gen_vec(int elems) {
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std::vector<int> vec(elems);
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for (int i = 0; i < elems; i++) {
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@ -42,13 +41,13 @@ static const std::vector<int> gen_vec(int elems) {
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}
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static const std::vector<int> gen_vec_rev(int from, int to) {
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int size = to - from+1;
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int size = to - from + 1;
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std::vector<int> vec(size);
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for (int i = from; i < to; i++) {
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vec[i] = i;
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std::cout << "i: " << i << "\n";
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}
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return vec;
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}
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@ -66,9 +65,8 @@ static bench_input barite_200_input = {
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.west_const = {0, 1, 2, 3, 4},
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.values = {111.0124, 55.50622, -3.336970273297e-08, 0.1, 0.2,
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.0, .0}},
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.timestep = 1000,
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.iterations = 50
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};
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.timestep = 500,
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.iterations = 100};
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static bench_input barite_large_input = {
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.csv_file_init = "@BARITE_LARGE_BENCH@/barite_large_init.csv",
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@ -83,9 +81,8 @@ static bench_input barite_large_input = {
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.east_const = {},
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.west_const = {},
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.values = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}},
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.timestep = 100,
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.iterations = 5
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};
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.timestep = 50,
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.iterations = 10};
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static bench_input surfex_input = {
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.csv_file_init = "@SURFEX_BENCH@/surfex_init.csv",
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@ -96,58 +93,31 @@ static bench_input surfex_input = {
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.s_x = 0.02,
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.s_y = 0.01,
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.boundary = {.north_const = gen_vec(200),
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.south_const = gen_vec(200),
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.south_const = gen_vec(200),
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.east_const = gen_vec(100),
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.west_const = gen_vec(100),
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.values = {120.0, // H
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55.1, // O
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8.0e-17, // Charge
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2.0e-15, // CH4
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0.2, // C
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0.03, // Ca
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0.5, // Cl
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0.0002, // Fe2
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2.0e-08, // Fe3
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2.0e-11, // H0
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1.0e-05, // K
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0.2, // Mg
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0.3, // Na
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0, // HS2
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8.3e-12, // S2
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5.1e-14, // S4
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0.026, // S6
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0.045, // Sr
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2.5e-08, // U4
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1.6e-10, // U5
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1.0e-05}}, // U6
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.timestep = 3600,
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.iterations = 20
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};
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.values = {120.0, // H
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55.1, // O
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8.0e-17, // Charge
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2.0e-15, // CH4
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0.2, // C
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0.03, // Ca
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0.5, // Cl
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0.0002, // Fe2
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2.0e-08, // Fe3
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2.0e-11, // H0
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1.0e-05, // K
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0.2, // Mg
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0.3, // Na
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0, // HS2
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8.3e-12, // S2
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5.1e-14, // S4
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0.026, // S6
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0.045, // Sr
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2.5e-08, // U4
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1.6e-10, // U5
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1.0e-05}}, // U6
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.timestep = 1800,
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.iterations = 40};
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#endif // _BENCH_DEFS_HPP
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