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chore: Extract benchmark data during CMake configuration

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This commit is contained in:
Max Lübke 2025-03-19 09:39:45 +01:00
parent 5141d0901a
commit d77956996c
3 changed files with 65 additions and 69 deletions
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10
Readme.md
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@ -6,11 +6,11 @@ This repository contains input data from POET simulations used in the
NAAICE project and is simulated with the latest version of tug with NAAICE project and is simulated with the latest version of tug with
heterogeneous alphas. heterogeneous alphas.
Benchmarks (grids, timestep, file paths, etc) are defined in the Benchmarks (grids, timestep, file paths, etc) are defined in the header file
header file `eval/bench_defs.hpp.in`. The data used by the three `eval/bench_defs.hpp.in`. The data used by the three benchmarks `barite_200`,
benchmarks `barite_200`, `barite_large` and `surfex` are in the `barite_large` and `surfex` are in the corresponding subdirectories of `eval`,
corresponding subdirectories of `eval`, as `tar.gz`. Remember to as `tar.gz`. Remember to unpack them before running the executable into the
unpack them before running the executable! same directory of the executable. Or just let CMake do it for you.
To write the results to file, set the `BENCH_OUTPUT` environmental To write the results to file, set the `BENCH_OUTPUT` environmental
variable, e.g. `BENCH_OUTPUT=1 ./bench`. The resulting fields are variable, e.g. `BENCH_OUTPUT=1 ./bench`. The resulting fields are

32
eval/CMakeLists.txt
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@ -1,5 +1,31 @@
set(BARITE_200_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/barite_200") set(benchmarks
set(BARITE_LARGE_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/barite_large") "${CMAKE_CURRENT_SOURCE_DIR}/barite_200"
set(SURFEX_BENCH "${CMAKE_CURRENT_SOURCE_DIR}/surfex") "${CMAKE_CURRENT_SOURCE_DIR}/barite_large"
"${CMAKE_CURRENT_SOURCE_DIR}/surfex"
)
foreach(benchmark ${benchmarks})
# find tar.gz files
file(GLOB_RECURSE tar_files "${benchmark}/*.tar.gz")
foreach(tar_file ${tar_files})
# get the name of the tar file
get_filename_component(tar_name ${tar_file} NAME_WE)
# get the name of the directory
get_filename_component(dir_name ${tar_file} DIRECTORY)
get_filename_component(dir_name ${dir_name} NAME)
# create the directory
message("Extracting ${tar_name} to ${dir_name}")
file(MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/${dir_name}")
# extract the tar file
execute_process(
COMMAND tar -xzf ${tar_file}
WORKING_DIRECTORY "${CMAKE_BINARY_DIR}/${dir_name}"
)
endforeach()
endforeach()
set(BARITE_200_BENCH "${CMAKE_BINARY_DIR}/barite_200")
set(BARITE_LARGE_BENCH "${CMAKE_BINARY_DIR}/barite_large")
set(SURFEX_BENCH "${CMAKE_BINARY_DIR}/surfex")
configure_file(bench_defs.hpp.in bench_defs.hpp) configure_file(bench_defs.hpp.in bench_defs.hpp)

92
eval/bench_defs.hpp.in
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@ -1,9 +1,9 @@
#ifndef _BENCH_DEFS_HPP #ifndef _BENCH_DEFS_HPP
#define _BENCH_DEFS_HPP #define _BENCH_DEFS_HPP
#include <iostream>
#include <string> #include <string>
#include <vector> #include <vector>
#include <iostream>
struct init_boundary { struct init_boundary {
const std::vector<int> north_const; const std::vector<int> north_const;
@ -31,7 +31,6 @@ struct bench_input {
const int iterations; const int iterations;
}; };
static const std::vector<int> gen_vec(int elems) { static const std::vector<int> gen_vec(int elems) {
std::vector<int> vec(elems); std::vector<int> vec(elems);
for (int i = 0; i < elems; i++) { for (int i = 0; i < elems; i++) {
@ -42,13 +41,13 @@ static const std::vector<int> gen_vec(int elems) {
} }
static const std::vector<int> gen_vec_rev(int from, int to) { static const std::vector<int> gen_vec_rev(int from, int to) {
int size = to - from+1; int size = to - from + 1;
std::vector<int> vec(size); std::vector<int> vec(size);
for (int i = from; i < to; i++) { for (int i = from; i < to; i++) {
vec[i] = i; vec[i] = i;
std::cout << "i: " << i << "\n"; std::cout << "i: " << i << "\n";
} }
return vec; return vec;
} }
@ -66,9 +65,8 @@ static bench_input barite_200_input = {
.west_const = {0, 1, 2, 3, 4}, .west_const = {0, 1, 2, 3, 4},
.values = {111.0124, 55.50622, -3.336970273297e-08, 0.1, 0.2, .values = {111.0124, 55.50622, -3.336970273297e-08, 0.1, 0.2,
.0, .0}}, .0, .0}},
.timestep = 1000, .timestep = 500,
.iterations = 50 .iterations = 100};
};
static bench_input barite_large_input = { static bench_input barite_large_input = {
.csv_file_init = "@BARITE_LARGE_BENCH@/barite_large_init.csv", .csv_file_init = "@BARITE_LARGE_BENCH@/barite_large_init.csv",
@ -83,9 +81,8 @@ static bench_input barite_large_input = {
.east_const = {}, .east_const = {},
.west_const = {}, .west_const = {},
.values = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}}, .values = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}},
.timestep = 100, .timestep = 50,
.iterations = 5 .iterations = 10};
};
static bench_input surfex_input = { static bench_input surfex_input = {
.csv_file_init = "@SURFEX_BENCH@/surfex_init.csv", .csv_file_init = "@SURFEX_BENCH@/surfex_init.csv",
@ -96,58 +93,31 @@ static bench_input surfex_input = {
.s_x = 0.02, .s_x = 0.02,
.s_y = 0.01, .s_y = 0.01,
.boundary = {.north_const = gen_vec(200), .boundary = {.north_const = gen_vec(200),
.south_const = gen_vec(200), .south_const = gen_vec(200),
.east_const = gen_vec(100), .east_const = gen_vec(100),
.west_const = gen_vec(100), .west_const = gen_vec(100),
.values = {120.0, // H .values = {120.0, // H
55.1, // O 55.1, // O
8.0e-17, // Charge 8.0e-17, // Charge
2.0e-15, // CH4 2.0e-15, // CH4
0.2, // C 0.2, // C
0.03, // Ca 0.03, // Ca
0.5, // Cl 0.5, // Cl
0.0002, // Fe2 0.0002, // Fe2
2.0e-08, // Fe3 2.0e-08, // Fe3
2.0e-11, // H0 2.0e-11, // H0
1.0e-05, // K 1.0e-05, // K
0.2, // Mg 0.2, // Mg
0.3, // Na 0.3, // Na
0, // HS2 0, // HS2
8.3e-12, // S2 8.3e-12, // S2
5.1e-14, // S4 5.1e-14, // S4
0.026, // S6 0.026, // S6
0.045, // Sr 0.045, // Sr
2.5e-08, // U4 2.5e-08, // U4
1.6e-10, // U5 1.6e-10, // U5
1.0e-05}}, // U6 1.0e-05}}, // U6
.timestep = 3600, .timestep = 1800,
.iterations = 20 .iterations = 40};
};
#endif // _BENCH_DEFS_HPP #endif // _BENCH_DEFS_HPP