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Add parallel grid creation function and update pqc_to_grid function
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@ -1,4 +1,7 @@
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pqc_to_grid <- function(pqc_in, grid) {
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has_foreach <- require(foreach)
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has_doParallel <- require(doParallel)
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seq_pqc_to_grid <- function(pqc_in, grid) {
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# Convert the input DataFrame to a matrix
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# Convert the input DataFrame to a matrix
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dt <- as.matrix(pqc_in)
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dt <- as.matrix(pqc_in)
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@ -29,6 +32,55 @@ pqc_to_grid <- function(pqc_in, grid) {
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return(res_df)
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return(res_df)
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}
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}
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par_pqc_to_grid <- function(pqc_in, grid) {
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# Convert the input DataFrame to a matrix
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dt <- as.matrix(pqc_in)
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# Flatten the matrix into a vector
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id_vector <- as.vector(t(grid))
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# Initialize an empty matrix to store the results
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# result_mat <- matrix(nrow = 0, ncol = ncol(dt))
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# Set up parallel processing
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num_cores <- detectCores()
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cl <- makeCluster(num_cores)
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registerDoParallel(cl)
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# Iterate over each ID in the vector in parallel
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result_mat <- foreach(id_mat = id_vector, .combine = rbind) %dopar% {
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# Find the matching row in the matrix
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matching_row <- dt[dt[, "ID"] == id_mat, ]
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# Return the matching row
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matching_row
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}
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# Stop the parallel processing
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stopCluster(cl)
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# Convert the result matrix to a data frame
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res_df <- as.data.frame(result_mat)
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# Remove all columns which only contain NaN
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res_df <- res_df[, colSums(is.na(res_df)) != nrow(res_df)]
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# Remove row names
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rownames(res_df) <- NULL
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return(res_df)
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}
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pqc_to_grid <- function(pqc_in, grid) {
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if (has_doParallel && has_foreach) {
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print("Using parallel grid creation")
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return(par_pqc_to_grid(pqc_in, grid))
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} else {
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print("Using sequential grid creation")
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return(seq_pqc_to_grid(pqc_in, grid))
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}
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}
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resolve_pqc_bound <- function(pqc_mat, transport_spec, id) {
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resolve_pqc_bound <- function(pqc_mat, transport_spec, id) {
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df <- as.data.frame(pqc_mat, check.names = FALSE)
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df <- as.data.frame(pqc_mat, check.names = FALSE)
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value <- df[df$ID == id, transport_spec]
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value <- df[df$ID == id, transport_spec]
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