Refactor build file generation

bench/CMakeLists.txt

@@ -1,3 +1,33 @@
+
+function(ADD_BENCH_TARGET TARGET POET_BENCH_LIST RT_FILES OUT_PATH)
+    add_custom_target(${TARGET})
+
+    set(bench_install_dir share/poet/${OUT_PATH})
+    foreach(BENCH_FILE ${${POET_BENCH_LIST}})
+        get_filename_component(BENCH_NAME ${BENCH_FILE} NAME_WE)
+        set(OUT_FILE ${CMAKE_CURRENT_BINARY_DIR}/${BENCH_NAME}.rds)
+
+        add_custom_command(TARGET ${TARGET}
+            COMMAND $<TARGET_FILE:poet_init> -o ${OUT_FILE} -s ${CMAKE_CURRENT_SOURCE_DIR}/${BENCH_FILE}
+            COMMENT "Running poet_init on ${BENCH_FILE}"
+            DEPENDS poet_init
+            VERBATIM
+        )
+
+        install(FILES ${OUT_FILE} DESTINATION ${bench_install_dir})
+    endforeach(BENCH_FILE ${${POET_BENCH_LIST}})
+
+    # install all ADD_FILES to the same location
+    install(FILES ${${RT_FILES}} DESTINATION ${bench_install_dir})
+endfunction()
+
+
+# define target name 
+set(BENCHTARGET benchmarks)
+
+add_custom_target(${BENCHTARGET} ALL)
+
+add_subdirectory(barite)
 add_subdirectory(dolo)
 add_subdirectory(surfex)
-add_subdirectory(barite)
+

bench/barite/CMakeLists.txt

@@ -1,8 +1,20 @@
-install(FILES
-    barite.R
-    barite_interp_eval.R
-    barite.pqi
-    db_barite.dat
-DESTINATION
-    share/poet/bench/barite
+# Create a list of files 
+set(bench_files
+    barite_200.R
+    barite_het.R
 )
+
+set(runtime_files
+    barite_200_rt.R
+    barite_het_rt.R
+)
+
+# add_custom_target(barite_bench DEPENDS ${bench_files} ${runtime_files})
+
+ADD_BENCH_TARGET(barite_bench 
+    bench_files 
+    runtime_files 
+    "barite"
+)
+
+add_dependencies(${BENCHTARGET} barite_bench)

bench/dolo/CMakeLists.txt

@@ -1,9 +1,18 @@
-install(FILES
-    dolo_diffu_inner.R
-    dolo_diffu_inner_large.R
-    dolo_inner.pqi
-    dolo_interp_long.R
-    phreeqc_kin.dat
-DESTINATION
-    share/poet/bench/dolo
+set(bench_files
+    dolo_inner_large.R
+    dolo_interp.R
 )
+
+set(runtime_files
+    dolo_inner_large_rt.R
+    dolo_interp_rt.R
+)
+
+ADD_BENCH_TARGET(
+    dolo_bench
+    bench_files 
+    runtime_files
+    "dolo"
+)
+
+add_dependencies(${BENCHTARGET} dolo_bench)

bench/surfex/CMakeLists.txt

@@ -1,9 +1,18 @@
-install(FILES
-    ExBase.pqi
-    ex.R
+set(bench_files
     surfex.R
-    SurfExBase.pqi
-    SMILE_2021_11_01_TH.dat
-DESTINATION
-    share/poet/bench/surfex
+    ex.R
 )
+
+set(runtime_files
+    surfex_rt.R 
+    ex_rt.R
+)
+
+ADD_BENCH_TARGET(
+    surfex_bench
+    bench_files 
+    runtime_files
+    "surfex"
+)
+
+add_dependencies(${BENCHTARGET} surfex_bench)

src/CMakeLists.txt

@@ -81,5 +81,5 @@ add_executable(poet_init initializer.cpp)
 target_link_libraries(poet_init PRIVATE POETLib RRuntime)
 target_include_directories(poet_init PRIVATE "${CMAKE_CURRENT_BINARY_DIR}")
 
-# install(TARGETS poet DESTINATION bin)
+install(TARGETS poet poet_init DESTINATION bin)