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fixed typo
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README.md
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README.md
@ -102,6 +102,11 @@ according to the binary.
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## Running
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Before POET is ready to run, a working directory must be created. In this
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directory you should find the executable file, the R scripts
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`<POET_ROOT>/R_lib/kin_r_library.R` and `<POET_ROOT>/R_lib/parallel_r_library.R`
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and the simulation description e.g. `<POET_ROOT>/data/chem_problems/SimDol2D.R`.
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Run POET by `mpirun ./poet <OPTIONS> <SIMFILE> <OUTPUT_DIRECTORY>` where:
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- **OPTIONS** - runtime parameters (explained below)
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@ -150,6 +155,7 @@ with 4 processes `cd` into your previously installed POET-dir
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``` sh
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mpirun -n 4 ./poet ../data/SimDol2D.R output
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```
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After a finished simulation all data generated by POET will be found in the
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directory `output`.
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@ -166,15 +172,21 @@ mpirun -n 4 ./poet -dht SimDol2D.R output
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- **SimDol2D.R** - simple chemistry (Calcite/Dolomite) on a 50x50 2D grid, 20
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time steps 2)
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- ~~**SimDolKtz.R** - simple chemistry (Calcite/Dolomite) on Ketzin grid (~650k
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- ~~ **SimDolKtz.R** - simple chemistry (Calcite/Dolomite) on Ketzin grid (~650k
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elements), 20 time steps The flow snapshots are **NOT INCLUDED** in project
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directory but must be provided separately.~~ At this moment **SimDolKtz.R** is
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not supported.
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## About the usage of MPI_Wtime()
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Implemented time measurement functions use `MPI_Wtime()`. Some important
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Implemented time measurement functions uses `MPI_Wtime()`. Some important
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informations from the OpenMPI Man Page:
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For example, on platforms that support it, the clock_gettime() function will be
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used to obtain a monotonic clock value with whatever precision is supported on
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that platform (e.g., nanoseconds).
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## External Libraries
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We use external libraries:
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- **argh** - https://github.com/adishavit/argh (BSD license)
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