build: Enhance Dockerfile for improved environment setup and dependency management

.devcontainer/Dockerfile

@@ -1,61 +1,83 @@
-FROM gcc:11.2.0
+FROM gcc:11.2.0 AS builder
 
 ENV DEBIAN_FRONTEND=noninteractive
 
 RUN apt-get update \
     && apt-get install -y \
-    git \
     sudo \
+    git \
     ninja-build \
-    fzf \
-    libblas-dev && \
+    libmpfr-dev \
+    python3-dev && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 
 WORKDIR /tmp
 
-RUN curl -Ls https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.5.tar.gz | tar xz && \
-    cd openmpi-5.0.5 && \
+ARG OPENMPI_VERSION=4.1.1
+ADD https://download.open-mpi.org/release/open-mpi/v${OPENMPI_VERSION%.*}/openmpi-${OPENMPI_VERSION}.tar.gz /tmp/openmpi.tar.gz
+
+RUN mkdir openmpi && \ 
+    tar xf openmpi.tar.gz -C openmpi --strip-components 1 && \
+    cd openmpi && \
     ./configure --prefix=/usr/local && \
     make -j $(nproc) && \
     make install && \
-    rm -rf /tmp/openmpi-5.0.5
+    rm -rf /tmp/openmpi tmp/openmpi.tar.gz
 
-RUN curl -Lo cmake.sh https://github.com/Kitware/CMake/releases/download/v3.30.5/cmake-3.30.5-linux-x86_64.sh \
-    && bash ./cmake.sh --skip-license --prefix=/usr/local \
+ARG CMAKE_VERSION=3.30.5
+ADD https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/cmake-${CMAKE_VERSION}-linux-x86_64.sh /tmp/cmake.sh
+
+RUN bash ./cmake.sh --skip-license --prefix=/usr/local \
     && rm cmake.sh
 
-RUN curl -Ls https://github.com/Reference-LAPACK/lapack/archive/refs/tags/v3.12.0.tar.gz | tar xz && \
-    cd lapack-3.12.0 && \
+ARG LAPACK_VERSION=3.12.0
+ADD https://github.com/Reference-LAPACK/lapack/archive/refs/tags/v${LAPACK_VERSION}.tar.gz /tmp/lapack.tar.gz
+
+RUN mkdir lapack && \
+    tar xf lapack.tar.gz -C lapack --strip-components 1 && \
+    cd lapack && \
     mkdir build && \
     cd build && \
     cmake .. -G Ninja -DBUILD_SHARED_LIBS=ON && \
     ninja install && \
-    rm -rf /tmp/lapack-3.12.0
+    rm -rf /tmp/lapack tmp/lapack.tar.gz
 
-RUN curl -Ls https://cran.r-project.org/src/base/R-4/R-4.4.2.tar.gz | tar xz && \
-    cd R-4.4.2 && \
+ARG R_VERSION=4.4.2
+ADD https://cran.r-project.org/src/base/R-${R_VERSION%%.*}/R-${R_VERSION}.tar.gz /tmp/R.tar.gz
+
+RUN mkdir R && \
+    tar xf R.tar.gz -C R --strip-components 1 && \
+    cd R && \
     ./configure --prefix=/usr/local --enable-R-shlib --with-blas --with-lapack && \
     make -j $(nproc) && \
     make install && \
-    rm -rf /tmp/R-4.4.2
+    rm -rf /tmp/R tmp/R.tar.gz
 
 RUN  /usr/local/bin/R -q -e "install.packages(c('Rcpp', 'RInside', 'qs'), repos='https://cran.rstudio.com/')"
 
-RUN curl -Ls https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.tar.bz2 | tar xj \
-    && mkdir /tmp/eigen-3.4.0/build \
-    && cd /tmp/eigen-3.4.0/build \
-    && cmake .. -G Ninja \
-    && ninja install \
-    && rm -rf /tmp/eigen-3.4.0
+ARG EIGEN_VERSION=3.4.0
+ADD https://gitlab.com/libeigen/eigen/-/archive/${EIGEN_VERSION}/eigen-${EIGEN_VERSION}.tar.bz2 /tmp/eigen.tar.bz2
 
-RUN git clone https://github.com/doctest/doctest.git /doctest \
-    && cd /doctest \
-    && mkdir build \
-    && cd build \
-    && cmake .. \
-    && make install \
-    && rm -rf /doctest
+RUN mkdir eigen && \
+    tar xf eigen.tar.bz2 -C eigen --strip-components 1 && \
+    cd eigen && \
+    mkdir build && \
+    cd build && \
+    cmake .. -G Ninja && \
+    ninja install && \
+    rm -rf /tmp/eigen tmp/eigen.tar.bz2
+
+ARG GDB_VERSION=15.2
+ADD https://ftp.gnu.org/gnu/gdb/gdb-${GDB_VERSION}.tar.xz /tmp/gdb.tar.xz
+
+RUN mkdir gdb && \
+    tar xf gdb.tar.xz -C gdb --strip-components 1 && \
+    cd gdb && \
+    ./configure --prefix=/usr/local && \
+    make -j $(nproc) && \
+    make install && \
+    rm -rf /tmp/gdb tmp/gdb.tar.xz
 
 RUN useradd -m -s /bin/bash -G sudo vscode \
     && echo "vscode ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers
@@ -64,7 +86,23 @@ USER vscode
 
 ENV LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
 
+RUN sudo apt-get update && \
+    sudo apt-get install -y zsh && \
+    sudo apt-get clean && \
+    sudo rm -rf /var/lib/apt/lists/*
+
 RUN sh -c "$(wget -O- https://github.com/deluan/zsh-in-docker/releases/download/v1.2.1/zsh-in-docker.sh)" -- \ 
-    -t agnoster 
+    -t agnoster \
+    -p zsh-syntax-highlighting
+
+RUN zsh -c "git clone https://github.com/zsh-users/zsh-syntax-highlighting.git ${ZSH_CUSTOM:-~/.oh-my-zsh/custom}/plugins/zsh-syntax-highlighting"
+
+RUN zsh -c "git clone --depth 1 https://github.com/junegunn/fzf.git ~/.fzf && ~/.fzf/install"
+
+RUN mkdir -p /home/vscode/.config/gdb \
+    && echo "set auto-load safe-path /" > /home/vscode/.config/gdb/gdbinit
+
+ENV CMAKE_GENERATOR=Ninja
+ENV CMAKE_EXPORT_COMPILE_COMMANDS=ON
 
 WORKDIR /home/vscode