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Author SHA1 Message Date
Max Lübke
7897c27644 perf: delete DHT object after shutdown 2023-01-06 10:51:03 +01:00
Max Luebke
0a8d2613e6 chore: remove unusable input script from install macro 2023-01-06 10:51:02 +01:00
Max Luebke
788513ff83 fix: missing namespace of phreeqcrm leads to ambiguous macro names 2023-01-06 10:51:02 +01:00
Max Luebke
af9a216e83 refactor: decouple ChemSim to ChemSimSeq and ChemSimPar 
refactor: cleanup of header files
 2023-01-06 10:51:02 +01:00
Max Luebke
c8453e48ca feat: Add phreeqcrm as submodule 2023-01-06 10:51:02 +01:00
Max Luebke
100b3746f5 fix: replace deprecated calls to MD5 functions 
perf: keep EVP context in memory during lifetime of DHT_Wrapper
 2022-12-01 16:46:58 +01:00
Max Lübke
756149c061 perf: remove unused R libraries/sources 2022-11-10 16:06:12 +01:00
Max Lübke
794cefdda3 perf: remove RRuntime as there is no need anymore 2022-11-10 16:06:12 +01:00
Max Lübke
d8e3a79034 feat: update input scripts to be used with DHT 2022-11-10 16:06:12 +01:00
Max Lübke
d406409fae refactor: conversion from R into C++ buffer inside worker function 2022-11-10 16:06:11 +01:00
Max Lübke
bf9f369846 refactor: cleanup of code, renaming of chemsitry module function and some output added to the diffusion module 2022-11-10 16:06:11 +01:00
Max Lübke
5a89c78bbc feat: enable parallelization with tug 2022-11-10 16:06:11 +01:00
Max Lübke
5a0749f06e fix: differentiate between 1D and 2D boundary condition 2022-11-10 16:06:11 +01:00
Max Lübke
34a4f1eaf2 fix: multiplication with 0 when starting 1D simulation 2022-11-10 16:06:11 +01:00
Max Lübke
5b4384ba86 refactor: edit input scripts to be expected input 2022-11-10 16:06:11 +01:00
Max Lübke
776e7d14c7 feat: allow more than one iteration in sequential mode 
fix: enable timesteps to simulate
 2022-11-10 16:06:11 +01:00
Max Lübke
d40bad186d refactor: cleanup R library 2022-11-10 16:06:11 +01:00
Max Lübke
dd32c0263e fix: use resize instead of reserve 2022-11-10 16:06:11 +01:00
Max Lübke
871a2ec82a BREAKING CHANGE: integrate 'tug' as diffusion module 
It is now possible to run a simulation for one iteration in sequential
mode without the use of Rmufits.

According scripts are provided.

refactor: TransportSim renamed to DiffusionModule

refactor: parsing of R input script is now done outside of simulation
modules (except ChemSim)
 2022-11-10 16:06:08 +01:00
Max Lübke
54681134b7 build: disable documentation generation per default 2022-11-10 16:02:20 +01:00
Max Lübke
e12510c4c2 fix: restore accidentally deleted edits to locate R packages 2022-11-10 16:00:11 +01:00
Max Lübke
0ade3762f0 build: Improve R library handling in CMake 2022-11-10 15:38:38 +01:00
Max Lübke
641e85bb85 ci: Init submodules recursive 2022-10-06 12:15:53 +02:00
Max Lübke
4aac153ed8 ci: Add generic build job 2022-10-06 11:01:49 +02:00
Max Lübke
1783160ba7 build: move headers to include 
build: instead of several libraries, build one lib and link to poet
application
 2022-10-05 12:16:53 +02:00
Max Lübke
0dee58b0de Update README.md 2021-02-26 19:35:51 +01:00
Max Lübke
60a8c11cec Merge branch 'dev' 2021-02-26 19:33:04 +01:00
Max Lübke
caaf33931e deleted old makefile 2021-02-26 19:23:12 +01:00
Marco De Lucia
6c6cb19677 Update README.md, changed options syntax from e.g. "-dht" to "--dht" 2021-02-24 14:07:46 +01:00
Marco De Lucia
272933c63f Update Output.md 2021-02-24 13:33:27 +01:00
Marco De Lucia
8b7d0381f1 Update README.md 2021-02-24 12:52:28 +01:00
Max Lübke
89b958970d Prepare project to transfer to svn + set poet version with help of 
git/textfiles
 2021-02-19 17:12:53 +01:00
Max Lübke
e9fdff456c update README.md 2021-02-17 19:57:08 +01:00
Max Lübke
3bbc2f325d new file describing output of POET + added target doxygen to CMake 2021-02-17 16:26:14 +01:00
Max Lübke
6246969041 change dht_collisions to dht_evictions + use option instead of set 2021-02-17 16:24:57 +01:00
Max Lübke
a580f450c0 update gitignore 2021-02-16 11:52:55 +01:00
Max Lübke
e0c0381681 Update README.md 2021-02-09 20:05:09 +01:00
Max Lübke
19c0442e46 fixed typo 2021-02-09 20:03:50 +01:00
Max Lübke
c223d9fd9a added CMake install process + rearrange data dir 2021-02-09 20:02:03 +01:00
Max Lübke
cce73d4d61 added CMake install process + rearrange data dir 2021-02-09 19:57:05 +01:00
Max Lübke
66bef8148a print version of POET at program startup 2021-02-09 18:57:57 +01:00
Max Lübke
4939decadd Added license header to all files 2021-02-09 17:58:23 +01:00
Max Lübke
09255f04c4 Add LICENSE 2021-02-09 17:39:10 +01:00
Max Lübke
5b822eec5a rename kin.cpp to poet.cpp + cleanup 2021-02-09 17:31:07 +01:00
Max Lübke
89068efb0e added BSD License Header 2021-02-08 19:51:20 +01:00
Max Lübke
4a0feff09b Fix linebreaks in directory tree 2021-02-08 13:58:02 +01:00
Max Lübke
a8ae69b62d New Readme + moved R libraries to another folder 2021-02-08 13:50:19 +01:00
Max Lübke
71730f8c08 add Doxyfile 2021-02-03 10:28:08 +01:00
Max Lübke
db3cb4ba29 cleanup of kin.cpp 2021-02-02 18:26:29 +01:00
Max Lübke
c8bb7262a0 documented libraries 2021-02-02 18:04:15 +01:00