467 Commits

Author SHA1 Message Date
Marco De Lucia
c4780fe9af Update references to .qs2 in README 2024-12-20 09:21:16 +01:00
Marco De Lucia
3d0a9041b5 Update README: qs2 as default output format, gfz.de everywhere 2024-12-20 09:21:16 +01:00
Marco De Lucia
54d6b6bbf2 Less and more informative stdout messages 2024-12-20 09:21:16 +01:00
Marco De Lucia
5493cf88a9 Added qs2 as new default format 2024-12-20 09:21:15 +01:00
Max Lübke
ff7cf31e10 Merge branch 'ml/gitlab-ci' into 'main'
Refactor CI pipeline by removing the build stage and adjusting test job dependencies

See merge request naaice/poet!47
2024-12-20 09:06:18 +01:00
Max Lübke
101f00f452 Refactor CI pipeline by removing the build stage and adjusting test job dependencies 2024-12-20 09:04:30 +01:00
Max Lübke
c0d3485edb Merge branch 'ml/fix-license' into 'main'
Revert "No code changes made."

See merge request naaice/poet!46
2024-12-20 09:00:27 +01:00
Max Lübke
426429f8a9 Update LICENSE to include updated copyright notice and additional guidelines for program distribution 2024-12-20 08:58:40 +01:00
Max Lübke
6714082646 Revert "No code changes made."
This reverts commit 8b35513b8824a31c21ab53c27ca2f89ce92ae36c.
2024-12-20 08:57:51 +01:00
Max Lübke
ea0c21c9da Merge branch 'ml/fix-license' into 'main'
Fix license parsing error of GitLab?

See merge request naaice/poet!45
2024-12-20 08:55:43 +01:00
Max Lübke
8b35513b88 No code changes made. 2024-12-20 08:46:51 +01:00
Max Lübke
9d7fa5457d Merge branch 'mdl/fgcsbench' into 'main'
Mdl/fgcsbench

See merge request naaice/poet!43
2024-12-13 12:19:57 +01:00
Marco De Lucia
f1b166145e reverting <format> since gcc < 13 does not support it 2024-12-13 12:14:55 +01:00
Marco De Lucia
fbd4739360 Update references to .qs2 in README 2024-12-13 12:14:55 +01:00
Marco De Lucia
ce5db73604 Update README: qs2 as default output format, gfz.de everywhere 2024-12-13 12:14:55 +01:00
Marco De Lucia
a714211560 Less and more informative stdout messages 2024-12-13 12:14:55 +01:00
Marco De Lucia
18725bf87d Added qs2 as new default format 2024-12-13 12:14:55 +01:00
Hannes Martin Signer
cc439e7b5e Merge branch 'update-scheme' into 'main'
update poet scheme

See merge request naaice/poet!42
2024-12-10 15:03:54 +01:00
Hannes Martin Signer
4d20b7c5bd Update 2 files
- /docs/POET_scheme.svg
- /docs/POET.drawio
2024-12-10 15:02:45 +01:00
Max Lübke
4737330786 Merge branch 'update-poet-scheme' into 'main'
update POET scheme

See merge request naaice/poet!41
2024-12-10 11:15:48 +01:00
Hannes Martin Signer
e40e6cb82f update POET scheme 2024-12-10 11:14:01 +01:00
Max Lübke
e920ab2811 Merge branch 'ml/iphreeqc-v0.3' into 'main'
Update IPhreeqc Submodule to v0.3

See merge request naaice/poet!40
2024-12-04 11:35:27 +01:00
Max Lübke
4d63544092 refactor: Replace PhreeqcEngine instances with PhreeqcRunner for improved chemistry processing 2024-12-04 10:34:13 +00:00
Max Lübke
c1ed926198 build: Enhance Dockerfile for improved environment setup and dependency management 2024-12-04 08:44:55 +00:00
Max Lübke
e31019e957 Merge branch 'ml/misc' into 'main'
Various changes to build files (CMake & devcontainer)

See merge request naaice/poet!38
2024-11-07 20:57:45 +01:00
Max Lübke
0ea5d70423 build: Update Dockerfile and devcontainer.json for enhanced environment setup 2024-11-07 19:56:04 +00:00
Max Lübke
c094aeaf39 build: Refactor R runtime detection in CMake to ensure required parameters are set 2024-11-07 19:56:04 +00:00
Max Lübke
909308b000 Merge branch 'ml/new-iphreeqc-api' into 'main'
Update to IPhreeqc v3.8.2

See merge request naaice/poet!37
2024-11-07 14:23:58 +01:00
Max Lübke
1f7b9f84cf fix: Update getSolutionNames call to remove unnecessary argument 2024-11-07 14:22:58 +01:00
Max Lübke
9650e59115 Update subproject commit in ext/iphreeqc 2024-11-07 14:22:51 +01:00
Marco De Lucia
85aeb04bc4 Merge branch 'delucia-readme-patch-68839' into 'main'
Fix: README.md

See merge request naaice/poet!36
2024-09-26 11:47:46 +02:00
Marco De Lucia
0573001758 Update README.md 2024-09-26 11:45:07 +02:00
Marco De Lucia
d603589375 Merge branch 'mdl/qs-rebased' into 'main'
rebased mdl/enable-qs to merge with main

See merge request naaice/poet!34
2024-09-16 13:07:43 +02:00
Max Luebke
57d05f5c76 fix: Corrected log10 calculation in master_iteration_end function 2024-09-16 12:05:19 +02:00
Max Luebke
66fb9e601c feat: use CLI11 as argument parser
feat: improve poet_initializer
2024-09-16 11:57:00 +02:00
Marco De Lucia
faf0ed20c3 fixed damn source_R 2024-09-12 16:15:21 +02:00
Marco De Lucia
8e7c5b1d60 cosmetic fixes in DiffusionInit.cpp 2024-09-12 14:57:11 +02:00
Marco De Lucia
6a8edd02bf fix: removed Time-stamp lines from README and CMake/ 2024-09-12 14:56:42 +02:00
Marco De Lucia
742b0babff fix: removed all Time-stamp lines from src/ 2024-09-12 14:56:09 +02:00
Marco De Lucia
7166cef64e fixing stuff and adding comments 2024-09-12 14:54:05 +02:00
Marco De Lucia
ee40abf68b Fixes in README and poet.cpp 2024-09-12 14:53:58 +02:00
Marco De Lucia
2d4f4021ad Update README.md 2024-09-12 14:51:44 +02:00
Max Lübke
76fc5bc0b4 refactor: Rework deferred R function evaluation
applied commit
fix: Unique pointer behaviour of `global_rt_setup` was messed up
2024-09-12 14:48:05 +02:00
Marco De Lucia
e72272764d fixed initializer. Format is given by extension in the -o argument 2024-09-12 14:42:59 +02:00
Marco De Lucia
5606a718db feat: fast serialization/storage using qs package via --qs flag
rebasing/merging
2024-09-12 14:42:24 +02:00
Marco De Lucia
d0c912e078 cosmetic fixes in DiffusionInit.cpp 2024-09-12 12:37:49 +02:00
Marco De Lucia
2e1ea7f9c5 fix: removed Time-stamp lines from README and CMake/
Solve conflict
2024-09-12 12:37:28 +02:00
Marco De Lucia
4be947e5f2 fix: removed all Time-stamp lines from src/ 2024-09-12 12:36:40 +02:00
Marco De Lucia
c39d40dc45 fixing stuff and adding comments 2024-09-12 12:36:40 +02:00
Marco De Lucia
f15eb084d0 Switched default bench init storage to qs 2024-09-12 12:36:40 +02:00