Max Lübke
1d484518f0
fix: re-enable DHT correctly
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feat: store excess H and O instead of total values
2023-04-24 16:58:48 +02:00
Max Lübke
c14820d112
Merge branch '7-use-field-data-structure-instead-plain-vector' into 'main'
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Resolve "Use field data structure instead of plain vector"
Closes #7
See merge request naaice/poet!12
2023-04-24 14:27:10 +02:00
Max Luebke
3c5a762f91
BREAKING CHANGE: use Field data structure instead of plain 1D vector to
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store concentrations
2023-04-24 14:25:55 +02:00
Max Lübke
88de97d79b
Merge branch '5-surface-exchange-benchmark-with-poet' into 'main'
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Resolve "Surface/Exchange benchmark with POET"
Closes #5
See merge request naaice/poet!10
2023-04-18 14:38:15 +02:00
Max Luebke
e214eb1b48
feat: add surface module
2023-04-17 15:52:27 +02:00
Max Lübke
bdd63c044e
Merge branch 'exchange' into 'main'
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Exchange
See merge request naaice/poet!3
2023-04-17 12:38:32 +02:00
Max Luebke
b90e180d87
refactor: remove bits/stdint-uintn.h as header
2023-04-17 12:37:43 +02:00
Max Luebke
59d65e6e29
BREAKING CHANGE: use dump mechanism of PhreeqcRM-GFZ to get and set
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internal variables
feat: enables exchange
data: added exchange only benchmark
data: applied required changes to benchmarks
2023-04-17 12:37:43 +02:00
Max Lübke
31b3ea22f6
Merge branch 'fix-barite' into 'main'
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Fix negative solutions in barite benchmark
See merge request naaice/poet!9
2023-04-13 18:08:46 +02:00
Max Luebke
73d3e5604a
fix: remove unnecessary RoundToZero function from DiffusionModule
2023-04-13 17:26:18 +02:00
Max Luebke
40188b045c
build: add benchmarks to install target
2023-04-13 17:17:36 +02:00
Marco De Lucia
105359e869
restoring CMakeLists
2023-04-11 17:46:48 +02:00
Marco De Lucia
25e53a3ab8
MDL: enable all subdirs in bench/ in CMakeLists
2023-04-11 14:58:48 +02:00
Marco De Lucia
652f319ce9
add bench/barite
2023-04-11 14:58:48 +02:00
Max Lübke
d8f22b6632
Merge branch 'fix-dht-key-size' into 'main'
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fix: wrong key size in DHT
See merge request naaice/poet!5
2023-04-05 12:51:48 +02:00
Max Luebke
e3fcafcf1c
fix: wrong key size in DHT
2023-04-05 11:46:10 +02:00
Max Lübke
106dccc943
Merge branch 'fix-ci' into 'main'
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ci: create build directories for pages
See merge request naaice/poet!7
2023-03-31 15:24:03 +02:00
Max Luebke
cdce7701b8
ci: create build directories for pages
2023-03-31 15:22:49 +02:00
Max Lübke
e29a4bff03
Merge branch 'fix-ci' into 'main'
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Fix CI
See merge request naaice/poet!6
2023-03-31 15:21:23 +02:00
Max Luebke
479ecf4398
ci: improve ci
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ci: add image to repository container registry
2023-03-31 15:19:23 +02:00
Max Luebke
bd559f12c7
fix: remove openssl includes
2023-03-31 15:18:56 +02:00
Max Luebke
3cce4ab9b8
build: remove crypto library as dependency
2023-03-31 15:18:56 +02:00
Max Lübke
810f16f64c
Merge branch 'fix-hashing' into 'main'
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fix: use Murmur hashing for DHT lookup
See merge request naaice/poet!2
2023-03-28 14:31:59 +02:00
Max Luebke
af5edfe766
fix: use Murmur hashing for DHT lookup
2023-03-28 14:27:00 +02:00
Max Lübke
76d71cd816
ci: fix release url and name
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ci: keep source artifacts forever
2023-03-20 15:47:43 +01:00
Max Lübke
a37fd435cb
Merge branch 'move-to-naaice-namespace' into 'main'
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chore: update project to fit in naaice namespace
See merge request naaice/poet!1
2023-03-15 13:27:07 +01:00
Max Lübke
aae5539166
chore: update project to fit in naaice namespace
2023-03-15 13:22:44 +01:00
Max Lübke
c96b024ff6
Merge branch 'add-phreeqcrm' into 'main'
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Refactor ChemistryModule and implement PhreeqcRM parallelization
See merge request sec34/port!22
2023-03-07 13:58:50 +01:00
Max Lübke
83a115faf9
chore: delete unused files
2023-03-07 13:44:41 +01:00
Max Lübke
f6ba639b1d
build: add POET version to doxygen parameter list
2023-03-07 13:44:41 +01:00
Max Lübke
25f503ffc5
doc: update documentation to latest progress
2023-03-07 13:44:41 +01:00
Max Lübke
0692638cb3
fix: converting to data frames substitutes special chars to '.'
2023-03-07 13:44:41 +01:00
Marco De Lucia
d17b758161
data: added surfex benchmark
2023-03-07 13:44:41 +01:00
Max Luebke
1d89835b16
fix: write fields using R after chem simulation
2023-03-07 13:44:41 +01:00
Max Luebke
a4a5595c9e
BREAKING CHANGE: Introduce ChemistryModule as extension of PhreeqcRM
2023-03-07 13:44:41 +01:00
Max Luebke
39573c1874
refactor: In SimParams, relocate trivial getter/setters to header file
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refactor: change vector data types of dht_signif_vector and
dht_prop_type_vector to both uint32
2023-03-06 18:07:41 +01:00
Max Luebke
2df771cd74
refactor: DHT_Wrapper class
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feat: add setters to DHT_Wrapper to set prop type vector and signif
vector
refactor: remove dependency from SimParams structure
feat: introduce new header defining DHT types
2023-03-06 18:07:41 +01:00
Max Lübke
af7e25c0b6
Merge branch 'fix-ci' into 'main'
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ci: fix pages job name
See merge request sec34/port!21
2023-03-06 18:06:19 +01:00
Max Luebke
4c8eaeeb5e
ci: fix pages job name
2023-03-06 18:04:49 +01:00
Max Lübke
4d85600093
Merge branch 'doc' into 'main'
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Enhanvcement of CI, enabling doxygen doc generation
See merge request sec34/port!20
2023-03-06 18:00:55 +01:00
Max Luebke
576dbbfc46
ci: Only build and test on merge request
2023-03-06 17:59:23 +01:00
Max Luebke
9a49201f0a
ci: add doxygen docs to pipeline and pages
2023-03-06 17:59:23 +01:00
Max Luebke
155153aa32
build: improve generation of doxygen docs using cmake/doxygen functions
2023-03-06 17:34:11 +01:00
Max Lübke
e77e79f1bf
Merge branch 'fix-chem' into 'main'
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chore: update PhreeqcRM-GFZ dependency
See merge request sec34/port!19
2023-03-03 15:51:55 +01:00
Max Lübke
c529b72f10
chore: update PhreeqcRM-GFZ dependency
2023-03-03 15:51:54 +01:00
Max Lübke
3de12c743c
Merge branch 'implement-field-class' into 'main'
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feat: add Field data structure as substitution of field declaration
See merge request sec34/port!18
2023-03-03 15:43:00 +01:00
Max Luebke
3f118d8991
ci: enable run of tests in CI
2023-03-03 15:41:11 +01:00
Max Luebke
0fcad65091
chore: add 'test' to commit group
2023-03-03 15:41:11 +01:00
Max Luebke
bac6a67702
test: add test cases for Field class
2023-03-03 15:41:11 +01:00
Max Luebke
a08565582e
chore: add doctest as dependency
2023-03-03 15:41:11 +01:00
