27 Commits

Author SHA1 Message Date
Marco De Lucia
dbb25dc0af more eqs and text 2023-08-26 13:41:00 +02:00
Marco De Lucia
a8d23a9563 eqs and text 2023-08-26 13:10:17 +02:00
Marco De Lucia
44c6e45fef some fixes 2023-08-26 12:50:12 +02:00
Marco De Lucia
3c530a68d0 Revert "Update file README.org"
This reverts commit 79ef735be72bfa3461efbef9c1b2b80af0d177f6
2023-08-26 12:49:31 +02:00
Marco De Lucia
79ef735be7 Update file README.org 2023-08-26 12:32:47 +02:00
Marco De Lucia
a5e68fbf34 doc: testing src_latex in README.org 2023-08-26 12:29:31 +02:00
Marco De Lucia
7269b6fc81 doc: added bench/barite/README.org 2023-08-26 12:26:52 +02:00
Max Luebke
a5c8982b98 feat: implement SEXP export of Field structure
feat: implement NamedVector based on Rcpp::NumericVector

feat: remove hard coded checks and substitute by R hook functions,
defined in the input script

refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors

test: add tests for NamedVector

test: extend tests for Field
2023-08-17 10:51:54 +02:00
Max Luebke
55f3be8c18 perf: remove unused parameters from paramlist and parameter structure
doc: update doc to latest changes

data: update benchmarks to latest changes
2023-08-02 14:00:14 +02:00
Max Luebke
999ecac139 feat: introduce LookupKey and rounding schemes
feat: implement data clustering using PHT

feat: implement interpolation

refactor: use named vector for DHT species definition and significant digits

data: remove unusable input scripts

data: move Phreeqc database to benchmark dir

refactor: rename dolomite benchmark directory

refactor: remove DHT prop type from input script
2023-08-01 18:34:50 +02:00
Max Lübke
1d484518f0 fix: re-enable DHT correctly
feat: store excess H and O instead of total values
2023-04-24 16:58:48 +02:00
Max Luebke
3c5a762f91 BREAKING CHANGE: use Field data structure instead of plain 1D vector to
store concentrations
2023-04-24 14:25:55 +02:00
Max Luebke
e214eb1b48 feat: add surface module 2023-04-17 15:52:27 +02:00
Max Luebke
59d65e6e29 BREAKING CHANGE: use dump mechanism of PhreeqcRM-GFZ to get and set
internal variables

feat: enables exchange

data: added exchange only benchmark

data: applied required changes to benchmarks
2023-04-17 12:37:43 +02:00
Max Luebke
40188b045c build: add benchmarks to install target 2023-04-13 17:17:36 +02:00
Marco De Lucia
652f319ce9 add bench/barite 2023-04-11 14:58:48 +02:00
Max Lübke
0692638cb3 fix: converting to data frames substitutes special chars to '.' 2023-03-07 13:44:41 +01:00
Marco De Lucia
d17b758161 data: added surfex benchmark 2023-03-07 13:44:41 +01:00
Max Luebke
a4a5595c9e BREAKING CHANGE: Introduce ChemistryModule as extension of PhreeqcRM 2023-03-07 13:44:41 +01:00
Max Luebke
26ba5394a3 build: add dolo_diffu_large to install list 2023-01-24 16:47:56 +01:00
Max Luebke
d15c84af58 R: enable control of output after each iteration 2023-01-24 16:11:03 +01:00
Max Luebke
37a473d430 data: adapt benchmarks to results of meeting 2023-01-24 16:11:03 +01:00
Marco De Lucia
cb66842523 MDL: suppressed warnings (hard coded for now); added 1k*2k simulation bench/dolo_diffu_inner_large 2023-01-24 16:10:08 +01:00
Max Lübke
5bb5774cf0 data: set signif vector and types 2023-01-24 16:10:08 +01:00
Max Lübke
b2f987b03c build: install scripts under 'share/poet' 2023-01-24 16:10:08 +01:00
Marco De Lucia
d58399e595 Fixed filenames in dolo_diffu_inner 2023-01-24 16:10:08 +01:00
Marco De Lucia
ddf3a02a26 Added "bench" dir with dolo_diffu_inner 2023-01-24 16:10:08 +01:00