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• d3632156a5 Add total_grid_cells to ChemistryInit struct Max Luebke 2024-03-21 22:33:40 +00:00
• a04344e435 Add total_grid_cells to ChemistryInit struct Max Luebke 2024-03-21 22:33:40 +00:00
• 756988da31 Add support for importing and exporting initial grid in InitialList class Max Lübke 2024-03-21 21:36:09 +00:00
• 4fc0d5547b Add support for importing and exporting initial grid in InitialList class Max Lübke 2024-03-21 21:36:09 +00:00
• 94a4f71038 Add Init/CMakeLists.txt and ChemistryInit.cpp files, and update initializer.cpp and InitialList.hpp Max Lübke 2024-03-20 23:46:57 +00:00
• 7d4c14c356 Add Init/CMakeLists.txt and ChemistryInit.cpp files, and update initializer.cpp and InitialList.hpp Max Lübke 2024-03-20 23:46:57 +00:00
• 4e86e7f86d Update include statement and add CMakeLists.txt for DataStructures Max Lübke 2024-03-20 22:33:23 +00:00
• 2797351057 Update include statement and add CMakeLists.txt for DataStructures Max Lübke 2024-03-20 22:33:23 +00:00
• ce2f9e237f Update grid and diffusion setup in test.R Max Luebke 2024-03-19 22:03:22 +00:00
• 8cd69bcde4 Update grid and diffusion setup in test.R Max Luebke 2024-03-19 22:03:22 +00:00
• bbeff06083 Add resolvePqcBound function and refactor parseBoundaries2D function Max Lübke 2024-03-19 15:37:29 +00:00
• 793c2bb4ff Add resolvePqcBound function and refactor parseBoundaries2D function Max Lübke 2024-03-19 15:37:29 +00:00
• 64ec44034c Update alpha matrix parsing Max Lübke 2024-03-19 14:07:25 +00:00
• ebfa10c236 Update alpha matrix parsing Max Lübke 2024-03-19 14:07:25 +00:00
• 1d24e670e5 Refactor initialization code for diffusion and grid Max Lübke 2024-03-19 13:39:59 +00:00
• badb01b4fe Refactor initialization code for diffusion and grid Max Lübke 2024-03-19 13:39:59 +00:00
• b6a5a7a6a2 Add file reading functionality and update script and database handling Max Lübke 2024-03-19 13:11:42 +00:00
• d77aad7d2e Add file reading functionality and update script and database handling Max Lübke 2024-03-19 13:11:42 +00:00
• 14411ac319 Refactor grid initialization and update member access in InitialList Max Lübke 2024-03-19 12:32:16 +00:00
• 8328fd1390 Refactor grid initialization and update member access in InitialList Max Lübke 2024-03-19 12:32:16 +00:00
• 534cc0f6bc Fix CFL-condition for now Max Lübke 2024-03-19 11:38:48 +01:00
• d5e11c851b Add support for tracking and reporting corrupt DHT buckets Max Lübke 2024-03-19 11:38:17 +01:00
• 15d9b06516 Update getModuleSizes function to use new API Max Lübke 2024-03-19 09:48:31 +00:00
• 8d6aafbec4 Update getModuleSizes function to use new API Max Lübke 2024-03-19 09:48:31 +00:00
• 822e069492 Refactor pqc_to_grid function to use matrix instead of data.table Max Lübke 2024-03-19 09:47:40 +00:00
• c9cf6c92e7 Refactor pqc_to_grid function to use matrix instead of data.table Max Lübke 2024-03-19 09:47:40 +00:00
• f832a9e0db Save latest changes, boundaries still missing or incomplete Max Luebke 2024-03-18 23:06:52 +01:00
• 60c3d7b022 Save latest changes, boundaries still missing or incomplete Max Luebke 2024-03-18 23:06:52 +01:00
• 87de816f93 Add modify_module_sizes function and modify module_sizes in InitialList class Max Luebke 2024-03-13 23:50:13 +01:00
• 9990c12de4 Add modify_module_sizes function and modify module_sizes in InitialList class Max Luebke 2024-03-13 23:50:13 +01:00
• 62ad47952b Update function name to replaceRawKeywordIDs in GridInit.cpp Max Luebke 2024-03-13 22:06:07 +01:00
• e102550835 Update function name to replaceRawKeywordIDs in GridInit.cpp Max Luebke 2024-03-13 22:06:07 +01:00
• 2a0dc93778 Update RAW Keywords to always refer to ID 1 Max Luebke 2024-03-13 22:05:06 +01:00
• eaf4b2b712 Update RAW Keywords to always refer to ID 1 Max Luebke 2024-03-13 22:05:06 +01:00
• f7a4bcd0aa Update CMakeLists.txt and add new files for barite_het simulation Max Luebke 2024-03-13 17:11:53 +01:00
• 31d09ecc27 Update CMakeLists.txt and add new files for barite_het simulation Max Luebke 2024-03-13 17:11:53 +01:00
• ec555c879c Remove installation of poet binary Max Luebke 2024-03-13 16:58:37 +01:00
• 5357bdf975 Remove installation of poet binary Max Luebke 2024-03-13 16:58:37 +01:00
• 3380eb4a8f Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp Max Luebke 2024-03-13 16:57:44 +01:00
• bcabe5bcc4 Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp Max Luebke 2024-03-13 16:57:44 +01:00
• 27e99052b2 Add apps directory and initializer application Max Lübke 2024-03-07 13:54:53 +00:00
• 24b0607e94 Add apps directory and initializer application Max Lübke 2024-03-07 13:54:53 +00:00
• 805f674043 Merge branch 'v0.x' into 'main' Max Lübke 2024-03-07 14:43:03 +01:00
• bec496e0fb Merge branch 'v0.x' into 'main' v0.2.1 Max Lübke 2024-03-07 14:43:03 +01:00
• 2612bf04ed Fix path in GitLab CI script Max Lübke 2024-03-07 13:41:50 +00:00
• a6063776ea Fix path in GitLab CI script Max Lübke 2024-03-07 13:41:50 +00:00
• ff6cf66be1 Update dependencies in ci.Dockerfile Max Lübke 2024-03-07 13:41:34 +00:00
• 29018afa13 Update dependencies in ci.Dockerfile Max Lübke 2024-03-07 13:41:34 +00:00
• 9d2c839a3d Merge branch 'v0.x' into 'main' Max Lübke 2024-03-07 14:40:15 +01:00
• 575739c4bd Merge branch 'v0.x' into 'main' Max Lübke 2024-03-07 14:40:15 +01:00
• 2c5c6dd166 Fix build of pages Max Lübke 2024-03-07 13:39:27 +00:00
• 5c44146633 Fix build of pages Max Lübke 2024-03-07 13:39:27 +00:00
• 99a62420e7 Add Dockerfile for CI environment Max Lübke 2024-03-07 13:39:14 +00:00
• 912c083353 Add Dockerfile for CI environment Max Lübke 2024-03-07 13:39:14 +00:00
• b0a4e7d64f Update to only store first and last iteration of advection model Max Lübke 2024-03-07 14:26:09 +01:00
• 2c17604882 Update build process to use external library for DHT_MPI too Max Lübke 2024-03-07 13:58:04 +01:00
• 7828b00268 Add OpenSSL dependency and implement MD5 hash function Max Lübke 2024-03-07 12:27:13 +01:00
• 6abf18ae73 Implement basic functionality using DHT_UCX Max Lübke 2023-12-18 09:32:20 +01:00
• 64568d5074 Add DHT submodule Max Lübke 2024-03-07 11:41:02 +01:00
• b0dbe9e7b8 Update parameters in dolo_adv.R Max Lübke 2024-03-07 11:32:31 +01:00
• e3b7824dd4 Fix variable time steps in AdvectionModule.cpp Max Lübke 2024-03-07 11:29:50 +01:00
• b3e879635a Update flux_val and iterations values Max Lübke 2024-03-06 16:06:44 +01:00
• f2ae204ddc Merge branch 'v0.x' into 'main' Max Lübke 2024-03-06 14:37:39 +01:00
• 606dc0ce1f Merge branch 'v0.x' into 'main' Max Lübke 2024-03-06 14:37:39 +01:00
• 1c170d687b Merge remote-tracking branch 'origin/main' into v0.x Max Lübke 2024-03-06 13:36:36 +00:00
• e6e159517d Merge remote-tracking branch 'origin/main' into v0.x Max Lübke 2024-03-06 13:36:36 +00:00
• 9c9abdb7ef Update include statement in test cases Max Lübke 2024-03-06 13:16:00 +00:00
• be7a861c78 Add OpenMP support and fix include paths Max Lübke 2024-03-06 13:06:53 +00:00
• 106f9c519e Update grid size and flux value in dolo_adv.R Max Lübke 2024-03-06 10:33:07 +01:00
• b1277bac22 Fix parsing of velocities in AdvectionModule constructor by using List over DataFrame Max Lübke 2024-03-06 10:32:52 +01:00
• 0c31a9c372 add benchmark for nico Max Lübke 2023-09-06 11:01:25 +02:00
• 32b2c5c741 try closed boundary Max Lübke 2023-09-05 14:26:16 +02:00
• 115dd87ba3 add output of time measurements Max Lübke 2023-09-05 09:56:45 +02:00
• 272f010047 load constant velocities at instantiation Max Lübke 2023-09-05 09:47:22 +02:00
• 4f0a8f3742 add openmp pragmas Max Lübke 2023-09-05 09:21:28 +02:00
• 7187582910 Revert "define fluxes and max fluxes as class members" Max Lübke 2023-09-05 09:04:37 +02:00
• 3a2769b1f6 add Phreeqc input script to install target Max Lübke 2023-09-05 09:03:44 +02:00
• 7dfe4efc23 define fluxes and max fluxes as class members Max Lübke 2023-09-01 16:24:17 +02:00
• 75f1036e3e remove all unusable benchmarks for sake of clarity Max Luebke 2023-08-28 12:15:02 +02:00
• 358aa51836 rename header containing file paths for tests Max Luebke 2023-08-22 12:50:29 +02:00
• d6c4be6ea3 fix wrong indexing Max Luebke 2023-08-22 12:47:02 +02:00
• b78d7d1a9b provide additional test input script Max Luebke 2023-08-22 12:46:14 +02:00
• 031a2e237b Implement advection into POET Max Luebke 2023-08-21 12:11:19 +02:00
• 201564d4d1 Store inactive cells with predefined values (bc) Max Luebke 2023-08-21 11:38:15 +02:00
• 43b70b089e reverted PlotFlow in Advection2D.R Marco De Lucia 2023-08-18 21:48:06 +02:00
• 664d92adf6 added Advection2D.R to util Marco De Lucia 2023-08-18 21:43:55 +02:00
• 9f6b27206e Implemented CFL condition Max Lübke 2023-08-18 16:18:42 +02:00
• 5e9639c72d First advection with fixed timestep and volume Max Lübke 2023-08-18 13:24:33 +02:00
• 430769f247 prep advection Max Luebke 2023-08-17 16:40:44 +02:00
• 7181465835 Update doxygen configuration Max Lübke 2024-03-06 12:25:30 +00:00
• 1b0d2c92fe Update doxygen configuration Max Lübke 2024-03-06 12:25:30 +00:00
• a3683f0459 Add Dockerfile and devcontainer.json for VS Code development environment Max Lübke 2024-03-06 12:24:34 +00:00
• 17bc121d7c Add Dockerfile and devcontainer.json for VS Code development environment Max Lübke 2024-03-06 12:24:34 +00:00
• 263f23534d Remove R_lib subdirectory from CMakeLists.txt Max Lübke 2024-03-06 12:20:27 +00:00
• e74805370e Remove R_lib subdirectory from CMakeLists.txt Max Lübke 2024-03-06 12:20:27 +00:00
• 66d64a5772 Merge branch 'include_scripts' into 'v0.x' Max Lübke 2024-03-06 12:34:49 +01:00
• 408aac4588 Merge branch 'include_scripts' into 'v0.x' Max Lübke 2024-03-06 12:34:49 +01:00
• ab83d8c350 Add R library file as string to executable Max Lübke 2024-03-06 12:34:02 +01:00
• 06c63a125b Add R library file as string to executable Max Lübke 2024-03-06 12:34:02 +01:00
• f542c5638b Merge branch 'restructure' into 'v0.x' Max Lübke 2024-03-06 12:03:49 +01:00