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Update grid configuration and diffusion boundary definitions in Initialization.md
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@ -18,6 +18,8 @@ list(
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## Grid (Geometry)
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$x$ equals to the horizontal axis, $y$ to the vertical axis.
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```r
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# Define grid configuration for POET model
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Grid <- list(
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@ -30,7 +32,7 @@ Grid <- list(
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pqc_db_string = character(), # Phreeqc database file as string
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#---#
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grid_def = matrix(), # Definition of the grid, containing IDs according to the Phreeqc input script
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grid_size = numeric(), # Size of the grid in meters
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grid_size = numeric(), # Size of the grid in meters (x,y)
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constant_cells = numeric(), # IDs of cells with constant concentration (PLACEHOLDER)
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porosity = numeric(nrow * ncol) | numeric(1), # Porosity of the grid (PLACEHOLDER)
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)
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@ -47,7 +49,7 @@ Diffusion <- list(
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boundaries = list( # Define boundary conditions for diffusion
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"N" = list(
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"type" = character(), # Define the type of boundary (e.g. "fixed_grad", "closed", "constant")
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"cell" = numeric(), # Define the cell ID; counting begins @ 1
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"cell" = numeric(), # Define the cell ID; counting begins @ 1 (N/W beginning on the left side to the right, E/S on the upper side downwards)
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"sol_id" = numeric(), # Define the Phreeqc solution ID for the boundary
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),
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# Only those boundaries needs to be defined, which are not "closed"
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