fix: add namespaces to executables

test/TestUtils.hpp

@@ -6,24 +6,21 @@
 #include <sstream>
 #include <stdexcept>
 
-using namespace std;
-using namespace Eigen;
+inline Eigen::MatrixXd CSV2Eigen(std::string file2Convert) {
 
-inline MatrixXd CSV2Eigen(string file2Convert) {
+  std::vector<double> matrixEntries;
 
-  vector<double> matrixEntries;
-
-  ifstream matrixDataFile(file2Convert);
+  std::ifstream matrixDataFile(file2Convert);
   if (matrixDataFile.fail()) {
-    throw invalid_argument("File probably non-existent!");
+    throw std::invalid_argument("File probably non-existent!");
   }
 
-  string matrixRowString;
-  string matrixEntry;
+  std::string matrixRowString;
+  std::string matrixEntry;
   int matrixRowNumber = 0;
 
   while (getline(matrixDataFile, matrixRowString)) {
-    stringstream matrixRowStringStream(matrixRowString);
+    std::stringstream matrixRowStringStream(matrixRowString);
     while (getline(matrixRowStringStream, matrixEntry, ' ')) {
       matrixEntries.push_back(stod(matrixEntry));
     }
@@ -32,18 +29,21 @@ inline MatrixXd CSV2Eigen(string file2Convert) {
     }
   }
 
-  return Map<Matrix<double, Dynamic, Dynamic, RowMajor>>(
+  return Eigen::Map<
+      Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor>>(
       matrixEntries.data(), matrixRowNumber,
       matrixEntries.size() / matrixRowNumber);
 }
 
-inline bool checkSimilarity(MatrixXd a, MatrixXd b, double precision = 1e-5) {
+inline bool checkSimilarity(Eigen::MatrixXd a, Eigen::MatrixXd b,
+                            double precision = 1e-5) {
   return a.isApprox(b, precision);
 }
 
-inline bool checkSimilarityV2(MatrixXd a, MatrixXd b, double maxDiff) {
+inline bool checkSimilarityV2(Eigen::MatrixXd a, Eigen::MatrixXd b,
+                              double maxDiff) {
 
-  MatrixXd diff = a - b;
+  Eigen::MatrixXd diff = a - b;
   double maxCoeff = diff.maxCoeff();
   return abs(maxCoeff) < maxDiff;
 }

test/testBoundary.cpp

@@ -5,6 +5,8 @@
 #include <tug/Boundary.hpp>
 #include <typeinfo>
 
+using namespace std;
+
 TEST_CASE("BoundaryElement") {
 
   SUBCASE("Closed case") {
@@ -71,4 +73,4 @@ TEST_CASE("Boundary Class") {
     CHECK_EQ(boundary2D.getBoundaryElement(BC_SIDE_LEFT, 0).getType(),
              boundary1DVector[0].getType());
   }
-}
+}

test/testGrid.cpp

@@ -2,6 +2,10 @@
 #include <doctest/doctest.h>
 #include <tug/Grid.hpp>
 
+using namespace Eigen;
+using namespace std;
+
+
 TEST_CASE("1D Grid, too small length") {
   int l = 2;
   CHECK_THROWS(Grid(l));
@@ -246,4 +250,4 @@ TEST_CASE("2D Grid non-quadratic") {
     dr = -2;
     CHECK_THROWS(grid.setDomain(dr, dc));
   }
-}
+}

test/testSimulation.cpp

@@ -8,6 +8,9 @@
 // include the configured header file
 #include <testSimulation.hpp>
 
+using namespace Eigen;
+using namespace std;
+
 static Grid setupSimulation(APPROACH approach, double timestep,
                             int iterations) {
   int row = 11;