adjusted XTREME csv output

examples/BTCS_2D_proto_example.cpp

@@ -70,7 +70,7 @@ int main(int argc, char *argv[]) {
     simulation.setIterations(100);
 
     // set kind of output [CSV_OUTPUT_OFF (default), CSV_OUTPUT_ON, CSV_OUTPUT_VERBOSE]
-    simulation.setOutputCSV(CSV_OUTPUT_VERBOSE);
+    simulation.setOutputCSV(CSV_OUTPUT_XTREME);
     
     // **** RUN SIMULATION ****
     

include/tug/Simulation.hpp

@@ -16,7 +16,7 @@ enum CSV_OUTPUT {
     CSV_OUTPUT_OFF, // do not produce csv output
     CSV_OUTPUT_ON, // produce csv output with last concentration matrix
     CSV_OUTPUT_VERBOSE, // produce csv output with all concentration matrices
-    CSV_OUTPUT_XTREME // produce csv output with all concentration matrices and simulation environment
+    CSV_OUTPUT_XTREME // produce csv output with all concentration matrices and boundary conditions at beginning
 };
 
 enum CONSOLE_OUTPUT {

src/Boundary.cpp

@@ -115,6 +115,10 @@ VectorXd Boundary::getBoundarySideValues(BC_SIDE side) {
     VectorXd values(length);
 
     for (int i = 0; i < length; i++) {
+        if (getBoundaryElementType(side, i) == tug::bc::BC_TYPE_CLOSED) {
+            values(i) = -1;
+            continue;
+        }
         values(i) = getBoundaryElementValue(side, i);
     }
 

src/Simulation.cpp

@@ -150,6 +150,7 @@ string Simulation::createCSVfile() {
     while (filesystem::exists(filename)) {
         appendIdent += 1;
         appendIdentString = to_string(appendIdent);
+        // ?? TODO why double filename?
         filename = filename = approachString + "_" + row + "_" + col + "_" + numIterations + "-" + appendIdentString + ".csv";
     }
 
@@ -166,9 +167,11 @@ string Simulation::createCSVfile() {
         //boundary right
         //boundary top
         //boundary bottom
-        file << row << endl;
-        file << col << endl;
-        file << numIterations << endl;
+        IOFormat one_row(StreamPrecision, DontAlignCols, "", " ");
+        file << bc.getBoundarySideValues(BC_SIDE_LEFT).format(one_row) << endl;
+        file << bc.getBoundarySideValues(BC_SIDE_RIGHT).format(one_row) << endl;
+        file << bc.getBoundarySideValues(BC_SIDE_TOP).format(one_row) << endl;
+        file << bc.getBoundarySideValues(BC_SIDE_BOTTOM).format(one_row) << endl;
         // TODO
         // file << to_string(bc.printBoundarySide) << endl;
         file << endl << endl;
@@ -218,7 +221,7 @@ void Simulation::run() {
             if (console_output == CONSOLE_OUTPUT_VERBOSE && i > 0) {
                 printConcentrationsConsole();
             }
-            if (csv_output == CSV_OUTPUT_VERBOSE) {
+            if (csv_output >= CSV_OUTPUT_VERBOSE) {
                 printConcentrationsCSV(filename);
             }
 
@@ -229,7 +232,7 @@ void Simulation::run() {
         auto milliseconds = std::chrono::duration_cast<std::chrono::milliseconds>(end - begin);
 
 	// MDL: meaningful stdout messages
-        std::cout << ":: run() finished in " << milliseconds.count() << "ms" << endl;
+        std::cout << "\n:: run() finished in " << milliseconds.count() << "ms" << endl;
 
     } else if (approach == BTCS_APPROACH) {
 
@@ -237,7 +240,7 @@ void Simulation::run() {
             if (console_output == CONSOLE_OUTPUT_VERBOSE && i > 0) {
                 printConcentrationsConsole();
             }
-            if (csv_output == CSV_OUTPUT_VERBOSE && i > 0) {
+            if (csv_output >= CSV_OUTPUT_VERBOSE) {
                 printConcentrationsCSV(filename);
             }
 

test/TestUtils.cpp

@@ -43,5 +43,5 @@ bool checkSimilarityV2(MatrixXd a, MatrixXd b, double maxDiff) {
 
     MatrixXd diff = a - b;
     double maxCoeff = diff.maxCoeff();
-    return maxCoeff < maxDiff;
+    return abs(maxCoeff) < maxDiff;
 }

test/testSimulation.cpp

@@ -7,7 +7,7 @@
 // include the configured header file
 #include <testSimulation.hpp>
 
-static Grid setupSimulation() {
+static Grid setupSimulation(APPROACH approach, double timestep, int iterations) {
     int row = 11;
     int col = 11;
     int domain_row = 10;
@@ -46,9 +46,10 @@ static Grid setupSimulation() {
 
 
     // Simulation
-    Simulation sim = Simulation(grid, bc, FTCS_APPROACH);
-    sim.setTimestep(0.001);
-    sim.setIterations(7000);
+    Simulation sim = Simulation(grid, bc, approach);
+    sim.setOutputConsole(CONSOLE_OUTPUT_ON);
+    sim.setTimestep(timestep);
+    sim.setIterations(iterations);
     sim.run();
 
     // RUN
@@ -56,21 +57,29 @@ static Grid setupSimulation() {
     
 }
 
-TEST_CASE("equality to reference matrix") {
+TEST_CASE("equality to reference matrix with FTCS") {
     // set string from the header file
     string test_path = testSimulationCSVDir;
     MatrixXd reference = CSV2Eigen(test_path);
-    Grid grid = setupSimulation();
+    Grid grid = setupSimulation(FTCS_APPROACH, 0.001, 7000);
     CHECK(checkSimilarity(reference, grid.getConcentrations(), 0.1) == true);
 }
 
+TEST_CASE("equality to reference matrix with BTCS") {
+    // set string from the header file
+    string test_path = testSimulationCSVDir;
+    MatrixXd reference = CSV2Eigen(test_path);
+    Grid grid = setupSimulation(BTCS_APPROACH, 1, 7);
+    CHECK(checkSimilarityV2(reference, grid.getConcentrations(), 0.01) == true);
+}
+
 TEST_CASE("Initialize environment"){
     int rc = 12;
     Grid grid(rc, rc);
     Boundary boundary(grid);
 
-    CHECK_NOTHROW(Simulation sim(grid, boundary, FTCS_APPROACH));
-    }
+    CHECK_NOTHROW(Simulation sim(grid, boundary, BTCS_APPROACH));
+}
 
 TEST_CASE("Simulation environment"){
     int rc = 12;