Max Lübke
15d9b06516
Update getModuleSizes function to use new API
2024-03-19 09:48:31 +00:00
Max Lübke
822e069492
Refactor pqc_to_grid function to use matrix instead of data.table
2024-03-19 09:47:40 +00:00
Max Luebke
f832a9e0db
Save latest changes, boundaries still missing or incomplete
2024-03-19 08:12:20 +00:00
Max Luebke
87de816f93
Add modify_module_sizes function and modify module_sizes in InitialList class
2024-03-13 23:50:13 +01:00
Max Luebke
62ad47952b
Update function name to replaceRawKeywordIDs in GridInit.cpp
2024-03-13 22:06:07 +01:00
Max Luebke
2a0dc93778
Update RAW Keywords to always refer to ID 1
2024-03-13 22:05:06 +01:00
Max Luebke
f7a4bcd0aa
Update CMakeLists.txt and add new files for barite_het simulation
2024-03-13 17:11:53 +01:00
Max Luebke
ec555c879c
Remove installation of poet binary
2024-03-13 16:58:37 +01:00
Max Luebke
3380eb4a8f
Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp
2024-03-13 16:57:44 +01:00
Max Lübke
27e99052b2
Add apps directory and initializer application
2024-03-07 13:54:53 +00:00
Max Lübke
2612bf04ed
Fix path in GitLab CI script
2024-03-07 13:41:50 +00:00
Max Lübke
ff6cf66be1
Update dependencies in ci.Dockerfile
2024-03-07 13:41:34 +00:00
Max Lübke
2c5c6dd166
Fix build of pages
2024-03-07 13:39:27 +00:00
Max Lübke
99a62420e7
Add Dockerfile for CI environment
2024-03-07 13:39:14 +00:00
Max Lübke
1c170d687b
Merge remote-tracking branch 'origin/main' into v0.x
2024-03-06 13:36:36 +00:00
Max Lübke
7181465835
Update doxygen configuration
2024-03-06 12:25:30 +00:00
Max Lübke
a3683f0459
Add Dockerfile and devcontainer.json for VS Code development environment
2024-03-06 12:25:17 +00:00
Max Lübke
263f23534d
Remove R_lib subdirectory from CMakeLists.txt
2024-03-06 12:24:07 +00:00
Max Lübke
66d64a5772
Merge branch 'include_scripts' into 'v0.x'
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Add R library file as string to executable
See merge request naaice/poet!21
2024-03-06 12:34:49 +01:00
Max Lübke
ab83d8c350
Add R library file as string to executable
2024-03-06 12:34:02 +01:00
Max Lübke
f542c5638b
Merge branch 'restructure' into 'v0.x'
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Refactor build process
See merge request naaice/poet!20
2024-03-06 12:03:49 +01:00
Max Lübke
0fa0aa699b
Remove unused CMakeLists.txt file for SurrogateModels
2024-03-06 12:03:02 +01:00
Max Lübke
ffb4fe6bc6
Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt
2024-03-06 12:01:19 +01:00
Max Lübke
a2ebc3f1d7
Update CMakeLists.txt and include headers in test files
2024-03-06 11:59:18 +01:00
Max Lübke
7abf987123
Add Macros.hpp and RInsidePOET.hpp***
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***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
2024-03-06 11:59:12 +01:00
Max Lübke
fbff818e48
Remove unused 'app' directory
2024-03-06 11:32:45 +01:00
Max Lübke
62412e8d87
Refactor build process
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Now include/app paths are combined in the src dir.
2024-03-06 11:26:52 +01:00
Max Lübke
e5ed6f9f87
Fix broken Dolo large benchmark
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Update surfex to a larger grid size
2024-03-01 12:57:42 +01:00
Max Lübke
ee0bd9167c
Update initial and boundary conditions for dolo large model
2024-02-26 12:34:42 +01:00
Max Lübke
caa54ebf5d
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
0b14de480b
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
Max Lübke
433f095f58
Update file dolo_interp_long.R
2023-11-21 16:25:50 +01:00
Max Lübke
75702bb351
docs: improve main SVG
2023-11-01 11:01:38 +01:00
Max Lübke
bb12c1bb81
feat: instead of always storing exact input and output make it dependent
...
on the usage of interpolation
2023-11-01 10:55:46 +01:00
Max Lübke
384f5bd336
feat: make storage of input values in DHT optional
2023-09-08 22:43:52 +02:00
Max Lübke
5cd517510f
fix: output DHT size in megabyte
2023-09-07 09:12:44 +02:00
Marco De Lucia
2b896fa070
docs: README for surfex bench
2023-08-26 18:39:50 +02:00
Marco De Lucia
e9ce4eeb1d
fix: stdout time for diffusion step. Fixes in READMEs
2023-08-26 17:34:21 +02:00
Marco De Lucia
bd5be576a7
docs: readmes for dolo & barite
2023-08-26 17:22:22 +02:00
Marco De Lucia
f0c9c3ea71
ICs, BCs, fixes
2023-08-26 14:24:26 +02:00
Marco De Lucia
b86931bffe
refs, eqs and text
2023-08-26 13:55:06 +02:00
Marco De Lucia
dbb25dc0af
more eqs and text
2023-08-26 13:41:00 +02:00
Marco De Lucia
a8d23a9563
eqs and text
2023-08-26 13:10:17 +02:00
Marco De Lucia
44c6e45fef
some fixes
2023-08-26 12:50:12 +02:00
Marco De Lucia
3c530a68d0
Revert "Update file README.org"
...
This reverts commit 79ef735be72bfa3461efbef9c1b2b80af0d177f6
2023-08-26 12:49:31 +02:00
Marco De Lucia
79ef735be7
Update file README.org
2023-08-26 12:32:47 +02:00
Marco De Lucia
a5e68fbf34
doc: testing src_latex in README.org
2023-08-26 12:29:31 +02:00
Marco De Lucia
7269b6fc81
doc: added bench/barite/README.org
2023-08-26 12:26:52 +02:00
Marco De Lucia
b961c26a85
testing staged changes
2023-08-17 14:29:09 +02:00
Max Luebke
a5c8982b98
feat: implement SEXP export of Field structure
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feat: implement NamedVector based on Rcpp::NumericVector
feat: remove hard coded checks and substitute by R hook functions,
defined in the input script
refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors
test: add tests for NamedVector
test: extend tests for Field
2023-08-17 10:51:54 +02:00
