Max Luebke
3d203f307f
Remove installation of poet binary
2024-03-13 16:58:37 +01:00
Max Luebke
a1e771f7ed
Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp
2024-03-13 16:57:44 +01:00
Max Lübke
c050613614
Add apps directory and initializer application
2024-03-07 13:54:53 +00:00
Max Lübke
2f72ebc73d
Fix path in GitLab CI script
2024-03-07 13:41:50 +00:00
Max Lübke
d86e7fa8f7
Update dependencies in ci.Dockerfile
2024-03-07 13:41:34 +00:00
Max Lübke
6e055a52e1
Fix build of pages
2024-03-07 13:39:27 +00:00
Max Lübke
49917d2d23
Add Dockerfile for CI environment
2024-03-07 13:39:14 +00:00
Max Lübke
09adce1f8b
Merge remote-tracking branch 'origin/main' into v0.x
2024-03-06 13:36:36 +00:00
Max Lübke
251f760564
Update doxygen configuration
2024-03-06 12:25:30 +00:00
Max Lübke
4887699b35
Add Dockerfile and devcontainer.json for VS Code development environment
2024-03-06 12:25:17 +00:00
Max Lübke
4b7700cb2a
Remove R_lib subdirectory from CMakeLists.txt
2024-03-06 12:24:07 +00:00
Max Lübke
62c0a74048
Merge branch 'include_scripts' into 'v0.x'
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Add R library file as string to executable
See merge request naaice/poet!21
2024-03-06 12:34:49 +01:00
Max Lübke
10c31e3a9a
Add R library file as string to executable
2024-03-06 12:34:02 +01:00
Max Lübke
13e79382fe
Merge branch 'restructure' into 'v0.x'
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Refactor build process
See merge request naaice/poet!20
2024-03-06 12:03:49 +01:00
Max Lübke
2bfee6c99f
Remove unused CMakeLists.txt file for SurrogateModels
2024-03-06 12:03:02 +01:00
Max Lübke
f7323c05c3
Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt
2024-03-06 12:01:19 +01:00
Max Lübke
3613d52d1e
Update CMakeLists.txt and include headers in test files
2024-03-06 11:59:18 +01:00
Max Lübke
1250dc59d9
Add Macros.hpp and RInsidePOET.hpp***
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***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
2024-03-06 11:59:12 +01:00
Max Lübke
52fdbb8d2f
Remove unused 'app' directory
2024-03-06 11:32:45 +01:00
Max Lübke
fb8a8d24b6
Refactor build process
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Now include/app paths are combined in the src dir.
2024-03-06 11:26:52 +01:00
Max Lübke
3d9f8d84cd
Fix broken Dolo large benchmark
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Update surfex to a larger grid size
2024-03-01 12:57:42 +01:00
Max Lübke
6c4df5f375
Update initial and boundary conditions for dolo large model
2024-02-26 12:34:42 +01:00
Max Lübke
b5eb0e6592
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
bb7e684d8f
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
Max Lübke
de3b2db455
Update file dolo_interp_long.R
2023-11-21 16:25:50 +01:00
Max Lübke
87c32156b9
docs: improve main SVG
2023-11-01 11:01:38 +01:00
Max Lübke
ffce08f406
feat: instead of always storing exact input and output make it dependent
...
on the usage of interpolation
2023-11-01 10:55:46 +01:00
Max Lübke
a9a14cf333
feat: make storage of input values in DHT optional
2023-09-08 22:43:52 +02:00
Max Lübke
c4995f86c0
fix: output DHT size in megabyte
2023-09-07 09:12:44 +02:00
Marco De Lucia
4ddf243520
docs: README for surfex bench
2023-08-26 18:39:50 +02:00
Marco De Lucia
5a38e5df0f
fix: stdout time for diffusion step. Fixes in READMEs
2023-08-26 17:34:21 +02:00
Marco De Lucia
efd01ea390
docs: readmes for dolo & barite
2023-08-26 17:22:22 +02:00
Marco De Lucia
d2039354eb
ICs, BCs, fixes
2023-08-26 14:24:26 +02:00
Marco De Lucia
8b8444edd4
refs, eqs and text
2023-08-26 13:55:06 +02:00
Marco De Lucia
5b9bc2c70c
more eqs and text
2023-08-26 13:41:00 +02:00
Marco De Lucia
ac9dc30eca
eqs and text
2023-08-26 13:10:17 +02:00
Marco De Lucia
451c37aac3
some fixes
2023-08-26 12:50:12 +02:00
Marco De Lucia
b8096411f6
Revert "Update file README.org"
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This reverts commit 462cf2f08e7426661b419a2f52bb48287f847d94
2023-08-26 12:49:31 +02:00
Marco De Lucia
79ef735be7
Update file README.org
2023-08-26 12:32:47 +02:00
Marco De Lucia
a5e68fbf34
doc: testing src_latex in README.org
2023-08-26 12:29:31 +02:00
Marco De Lucia
7269b6fc81
doc: added bench/barite/README.org
2023-08-26 12:26:52 +02:00
Marco De Lucia
b961c26a85
testing staged changes
2023-08-17 14:29:09 +02:00
Max Luebke
a5c8982b98
feat: implement SEXP export of Field structure
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feat: implement NamedVector based on Rcpp::NumericVector
feat: remove hard coded checks and substitute by R hook functions,
defined in the input script
refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors
test: add tests for NamedVector
test: extend tests for Field
2023-08-17 10:51:54 +02:00
Max Luebke
4660fd4c48
chore: add .cache to gitignore
2023-08-16 12:21:19 +02:00
Max Luebke
74ebe3e1f1
fix: only write PHT dump file if advised to do so
2023-08-15 17:33:10 +02:00
Marco De Lucia
344f73af23
fix: unnest pht- and dht-related outputs and stats collection in WorkerPostIter and WorkerPostSim
2023-08-11 14:44:26 +02:00
Marco De Lucia
fef482f5e0
fix: rounded_key instead of roundedKey
2023-08-11 11:04:11 +02:00
Max Lübke
d4f525ccbf
ci: add expiration date for build artifacts
2023-08-11 10:26:40 +02:00
Max Lübke
2d22daa820
ci: always run build and test stage on new commits
2023-08-11 10:19:02 +02:00
Max Luebke
f81fdfa3b4
fix: remove reworked part in output
2023-08-10 14:17:17 +02:00
