Max Luebke
47aa43d1e1
Add DHT functionality, still need to be validated
2024-04-02 14:14:19 +00:00
Max Luebke
082a758f18
Add chemistry initialization to InitialList class
2024-04-02 12:06:55 +00:00
Max Luebke
bd4d7a38ca
Add dolo_200_rt.R, dol.pqi, and dolo_200.R files for simulation setup
2024-04-02 11:41:38 +00:00
Max Luebke
fb725f0b50
Update dependencies and refactor code
2024-04-02 11:41:38 +00:00
Max Luebke
f184fb7962
Remove doctest submodule and update gitmodules
2024-04-02 10:33:56 +00:00
Max Luebke
20d0eb52ae
Update CMakeLists.txt and include headers in test files
2024-04-02 09:25:18 +00:00
Max Luebke
53f68a2e56
Remove unnecessary includes and update function signature
2024-04-02 09:16:58 +00:00
Max Lübke
a345191d5a
Update dependencies and refactor code
2024-03-28 14:23:20 +00:00
Max Lübke
38a631f0ab
Add Basic heterogeneous diffusion functionality
2024-03-27 20:34:48 +00:00
Max Luebke
d3632156a5
Add total_grid_cells to ChemistryInit struct
2024-03-21 22:33:40 +00:00
Max Lübke
756988da31
Add support for importing and exporting initial grid in InitialList class
2024-03-21 21:36:09 +00:00
Max Lübke
94a4f71038
Add Init/CMakeLists.txt and ChemistryInit.cpp files, and update initializer.cpp and InitialList.hpp
2024-03-20 23:46:57 +00:00
Max Lübke
4e86e7f86d
Update include statement and add CMakeLists.txt for DataStructures
2024-03-20 22:33:23 +00:00
Max Luebke
ce2f9e237f
Update grid and diffusion setup in test.R
2024-03-19 22:03:22 +00:00
Max Lübke
bbeff06083
Add resolvePqcBound function and refactor parseBoundaries2D function
2024-03-19 15:37:29 +00:00
Max Lübke
64ec44034c
Update alpha matrix parsing
2024-03-19 14:07:25 +00:00
Max Lübke
1d24e670e5
Refactor initialization code for diffusion and grid
2024-03-19 13:39:59 +00:00
Max Lübke
b6a5a7a6a2
Add file reading functionality and update script and database handling
2024-03-19 13:11:42 +00:00
Max Lübke
14411ac319
Refactor grid initialization and update member access in InitialList
2024-03-19 12:32:16 +00:00
Max Lübke
15d9b06516
Update getModuleSizes function to use new API
2024-03-19 09:48:31 +00:00
Max Lübke
822e069492
Refactor pqc_to_grid function to use matrix instead of data.table
2024-03-19 09:47:40 +00:00
Max Luebke
f832a9e0db
Save latest changes, boundaries still missing or incomplete
2024-03-19 08:12:20 +00:00
Max Luebke
87de816f93
Add modify_module_sizes function and modify module_sizes in InitialList class
2024-03-13 23:50:13 +01:00
Max Luebke
62ad47952b
Update function name to replaceRawKeywordIDs in GridInit.cpp
2024-03-13 22:06:07 +01:00
Max Luebke
2a0dc93778
Update RAW Keywords to always refer to ID 1
2024-03-13 22:05:06 +01:00
Max Luebke
f7a4bcd0aa
Update CMakeLists.txt and add new files for barite_het simulation
2024-03-13 17:11:53 +01:00
Max Luebke
ec555c879c
Remove installation of poet binary
2024-03-13 16:58:37 +01:00
Max Luebke
3380eb4a8f
Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp
2024-03-13 16:57:44 +01:00
Max Lübke
27e99052b2
Add apps directory and initializer application
2024-03-07 13:54:53 +00:00
Max Lübke
2612bf04ed
Fix path in GitLab CI script
2024-03-07 13:41:50 +00:00
Max Lübke
ff6cf66be1
Update dependencies in ci.Dockerfile
2024-03-07 13:41:34 +00:00
Max Lübke
2c5c6dd166
Fix build of pages
2024-03-07 13:39:27 +00:00
Max Lübke
99a62420e7
Add Dockerfile for CI environment
2024-03-07 13:39:14 +00:00
Max Lübke
1c170d687b
Merge remote-tracking branch 'origin/main' into v0.x
2024-03-06 13:36:36 +00:00
Max Lübke
7181465835
Update doxygen configuration
2024-03-06 12:25:30 +00:00
Max Lübke
a3683f0459
Add Dockerfile and devcontainer.json for VS Code development environment
2024-03-06 12:25:17 +00:00
Max Lübke
263f23534d
Remove R_lib subdirectory from CMakeLists.txt
2024-03-06 12:24:07 +00:00
Max Lübke
66d64a5772
Merge branch 'include_scripts' into 'v0.x'
...
Add R library file as string to executable
See merge request naaice/poet!21
2024-03-06 12:34:49 +01:00
Max Lübke
ab83d8c350
Add R library file as string to executable
2024-03-06 12:34:02 +01:00
Max Lübke
f542c5638b
Merge branch 'restructure' into 'v0.x'
...
Refactor build process
See merge request naaice/poet!20
2024-03-06 12:03:49 +01:00
Max Lübke
0fa0aa699b
Remove unused CMakeLists.txt file for SurrogateModels
2024-03-06 12:03:02 +01:00
Max Lübke
ffb4fe6bc6
Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt
2024-03-06 12:01:19 +01:00
Max Lübke
a2ebc3f1d7
Update CMakeLists.txt and include headers in test files
2024-03-06 11:59:18 +01:00
Max Lübke
7abf987123
Add Macros.hpp and RInsidePOET.hpp***
...
***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
2024-03-06 11:59:12 +01:00
Max Lübke
fbff818e48
Remove unused 'app' directory
2024-03-06 11:32:45 +01:00
Max Lübke
62412e8d87
Refactor build process
...
Now include/app paths are combined in the src dir.
2024-03-06 11:26:52 +01:00
Max Lübke
e5ed6f9f87
Fix broken Dolo large benchmark
...
Update surfex to a larger grid size
2024-03-01 12:57:42 +01:00
Max Lübke
ee0bd9167c
Update initial and boundary conditions for dolo large model
2024-02-26 12:34:42 +01:00
Max Lübke
caa54ebf5d
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
0b14de480b
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
