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Author SHA1 Message Date
Max Lübke
6abf18ae73 Implement basic functionality using DHT_UCX 2024-03-07 12:00:17 +01:00
Max Lübke
64568d5074 Add DHT submodule 2024-03-07 11:41:02 +01:00
Max Lübke
b0dbe9e7b8 Update parameters in dolo_adv.R 2024-03-07 11:32:31 +01:00
Max Lübke
e3b7824dd4 Fix variable time steps in AdvectionModule.cpp 2024-03-07 11:29:50 +01:00
Max Lübke
b3e879635a Update flux_val and iterations values 2024-03-06 16:06:44 +01:00
Max Lübke
9c9abdb7ef Update include statement in test cases 2024-03-06 13:20:24 +00:00
Max Lübke
be7a861c78 Add OpenMP support and fix include paths 2024-03-06 13:06:53 +00:00
Max Lübke
106f9c519e Update grid size and flux value in dolo_adv.R 2024-03-06 12:57:56 +00:00
Max Lübke
b1277bac22 Fix parsing of velocities in AdvectionModule constructor by using List over DataFrame 2024-03-06 12:57:56 +00:00
Max Lübke
0c31a9c372 add benchmark for nico 2024-03-06 12:57:56 +00:00
Max Lübke
32b2c5c741 try closed boundary 2024-03-06 12:57:56 +00:00
Max Lübke
115dd87ba3 add output of time measurements 2024-03-06 12:57:45 +00:00
Max Lübke
272f010047 load constant velocities at instantiation 2024-03-06 12:57:36 +00:00
Max Lübke
4f0a8f3742 add openmp pragmas 2024-03-06 12:57:25 +00:00
Max Lübke
7187582910 Revert "define fluxes and max fluxes as class members" 
This reverts commit d218697c3bc7769c285d8f1e865bf0bd20cf2299.
 2024-03-06 12:57:13 +00:00
Max Lübke
3a2769b1f6 add Phreeqc input script to install target 2024-03-06 12:57:06 +00:00
Max Lübke
7dfe4efc23 define fluxes and max fluxes as class members 2024-03-06 12:57:06 +00:00
Max Luebke
75f1036e3e remove all unusable benchmarks for sake of clarity 2024-03-06 12:56:57 +00:00
Max Luebke
358aa51836 rename header containing file paths for tests 2024-03-06 12:56:57 +00:00
Max Luebke
d6c4be6ea3 fix wrong indexing 2024-03-06 12:56:34 +00:00
Max Luebke
b78d7d1a9b provide additional test input script 2024-03-06 12:56:22 +00:00
Max Luebke
031a2e237b Implement advection into POET 2024-03-06 12:56:22 +00:00
Max Luebke
201564d4d1 Store inactive cells with predefined values (bc) 2024-03-06 12:56:10 +00:00
Marco De Lucia
43b70b089e reverted PlotFlow in Advection2D.R 2024-03-06 12:56:10 +00:00
Marco De Lucia
664d92adf6 added Advection2D.R to util 2024-03-06 12:56:10 +00:00
Max Lübke
9f6b27206e Implemented CFL condition 2024-03-06 12:56:10 +00:00
Max Lübke
5e9639c72d First advection with fixed timestep and volume 2024-03-06 12:55:53 +00:00
Max Luebke
430769f247 prep advection 2024-03-06 12:55:25 +00:00
Max Lübke
1b0d2c92fe Update doxygen configuration 2024-03-06 12:25:30 +00:00
Max Lübke
17bc121d7c Add Dockerfile and devcontainer.json for VS Code development environment 2024-03-06 12:25:17 +00:00
Max Lübke
e74805370e Remove R_lib subdirectory from CMakeLists.txt 2024-03-06 12:24:07 +00:00
Max Lübke
408aac4588 Merge branch 'include_scripts' into 'v0.x' 
Add R library file as string to executable

See merge request naaice/poet!21
 2024-03-06 12:34:49 +01:00
Max Lübke
06c63a125b Add R library file as string to executable 2024-03-06 12:34:02 +01:00
Max Lübke
bfe4d0d751 Merge branch 'restructure' into 'v0.x' 
Refactor build process

See merge request naaice/poet!20
 2024-03-06 12:03:49 +01:00
Max Lübke
f1f56494f9 Remove unused CMakeLists.txt file for SurrogateModels 2024-03-06 12:03:02 +01:00
Max Lübke
58435a94d6 Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt 2024-03-06 12:01:19 +01:00
Max Lübke
5ddc239499 Update CMakeLists.txt and include headers in test files 2024-03-06 11:59:18 +01:00
Max Lübke
a17f40d31c Add Macros.hpp and RInsidePOET.hpp*** 
***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
 2024-03-06 11:59:12 +01:00
Max Lübke
547156b017 Remove unused 'app' directory 2024-03-06 11:32:45 +01:00
Max Lübke
599088d964 Refactor build process 
Now include/app paths are combined in the src dir.
 2024-03-06 11:26:52 +01:00
Max Lübke
42e740beb9 Fix broken Dolo large benchmark 
Update surfex to a larger grid size
 2024-03-01 12:57:42 +01:00
Max Lübke
19429516a9 Update initial and boundary conditions for dolo large model 2024-02-26 12:34:42 +01:00
Max Lübke
c685ff536e Add .vscode to .gitignore 2024-02-22 09:47:05 +01:00
Marco De Lucia
3f89321e71 fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R 2024-01-12 12:50:54 +01:00
Max Lübke
2204f0f793 Update file dolo_interp_long.R 2023-11-21 16:25:50 +01:00
Max Lübke
d0e3a5fbe0 docs: improve main SVG 2023-11-01 11:01:38 +01:00
Max Lübke
6bd37ccb5e feat: instead of always storing exact input and output make it dependent 
on the usage of interpolation
 2023-11-01 10:55:46 +01:00
Max Lübke
ba65f72984 feat: make storage of input values in DHT optional 2023-09-08 22:43:52 +02:00
Max Lübke
1b553205cd fix: output DHT size in megabyte 2023-09-07 09:12:44 +02:00
Marco De Lucia
30e510f8ff docs: README for surfex bench 2023-08-26 18:39:50 +02:00