Max Lübke
f2ae204ddc
Merge branch 'v0.x' into 'main'
...
Preparation for EuroPar24 contribution
See merge request naaice/poet!23
2024-03-06 14:37:39 +01:00
Max Lübke
1c170d687b
Merge remote-tracking branch 'origin/main' into v0.x
2024-03-06 13:36:36 +00:00
Max Lübke
7181465835
Update doxygen configuration
2024-03-06 12:25:30 +00:00
Max Lübke
a3683f0459
Add Dockerfile and devcontainer.json for VS Code development environment
2024-03-06 12:25:17 +00:00
Max Lübke
263f23534d
Remove R_lib subdirectory from CMakeLists.txt
2024-03-06 12:24:07 +00:00
Max Lübke
66d64a5772
Merge branch 'include_scripts' into 'v0.x'
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Add R library file as string to executable
See merge request naaice/poet!21
2024-03-06 12:34:49 +01:00
Max Lübke
ab83d8c350
Add R library file as string to executable
2024-03-06 12:34:02 +01:00
Max Lübke
f542c5638b
Merge branch 'restructure' into 'v0.x'
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Refactor build process
See merge request naaice/poet!20
2024-03-06 12:03:49 +01:00
Max Lübke
0fa0aa699b
Remove unused CMakeLists.txt file for SurrogateModels
2024-03-06 12:03:02 +01:00
Max Lübke
ffb4fe6bc6
Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt
2024-03-06 12:01:19 +01:00
Max Lübke
a2ebc3f1d7
Update CMakeLists.txt and include headers in test files
2024-03-06 11:59:18 +01:00
Max Lübke
7abf987123
Add Macros.hpp and RInsidePOET.hpp***
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***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
2024-03-06 11:59:12 +01:00
Max Lübke
fbff818e48
Remove unused 'app' directory
2024-03-06 11:32:45 +01:00
Max Lübke
62412e8d87
Refactor build process
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Now include/app paths are combined in the src dir.
2024-03-06 11:26:52 +01:00
Max Lübke
e5ed6f9f87
Fix broken Dolo large benchmark
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Update surfex to a larger grid size
2024-03-01 12:57:42 +01:00
Max Lübke
ee0bd9167c
Update initial and boundary conditions for dolo large model
2024-02-26 12:34:42 +01:00
Max Lübke
caa54ebf5d
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
0b14de480b
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
Max Lübke
433f095f58
Update file dolo_interp_long.R
2023-11-21 16:25:50 +01:00
Max Lübke
75702bb351
docs: improve main SVG
2023-11-01 11:01:38 +01:00
Max Lübke
bb12c1bb81
feat: instead of always storing exact input and output make it dependent
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on the usage of interpolation
2023-11-01 10:55:46 +01:00
Max Lübke
384f5bd336
feat: make storage of input values in DHT optional
2023-09-08 22:43:52 +02:00
Max Lübke
5cd517510f
fix: output DHT size in megabyte
2023-09-07 09:12:44 +02:00
Marco De Lucia
2b896fa070
docs: README for surfex bench
2023-08-26 18:39:50 +02:00
Marco De Lucia
e9ce4eeb1d
fix: stdout time for diffusion step. Fixes in READMEs
2023-08-26 17:34:21 +02:00
Marco De Lucia
bd5be576a7
docs: readmes for dolo & barite
2023-08-26 17:22:22 +02:00
Marco De Lucia
f0c9c3ea71
ICs, BCs, fixes
2023-08-26 14:24:26 +02:00
Marco De Lucia
b86931bffe
refs, eqs and text
2023-08-26 13:55:06 +02:00
Marco De Lucia
dbb25dc0af
more eqs and text
2023-08-26 13:41:00 +02:00
Marco De Lucia
a8d23a9563
eqs and text
2023-08-26 13:10:17 +02:00
Marco De Lucia
44c6e45fef
some fixes
2023-08-26 12:50:12 +02:00
Marco De Lucia
3c530a68d0
Revert "Update file README.org"
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This reverts commit 79ef735be72bfa3461efbef9c1b2b80af0d177f6
2023-08-26 12:49:31 +02:00
Marco De Lucia
79ef735be7
Update file README.org
2023-08-26 12:32:47 +02:00
Marco De Lucia
a5e68fbf34
doc: testing src_latex in README.org
2023-08-26 12:29:31 +02:00
Marco De Lucia
7269b6fc81
doc: added bench/barite/README.org
2023-08-26 12:26:52 +02:00
Marco De Lucia
b961c26a85
testing staged changes
2023-08-17 14:29:09 +02:00
Max Luebke
a5c8982b98
feat: implement SEXP export of Field structure
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feat: implement NamedVector based on Rcpp::NumericVector
feat: remove hard coded checks and substitute by R hook functions,
defined in the input script
refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors
test: add tests for NamedVector
test: extend tests for Field
2023-08-17 10:51:54 +02:00
Max Luebke
4660fd4c48
chore: add .cache to gitignore
2023-08-16 12:21:19 +02:00
Max Luebke
74ebe3e1f1
fix: only write PHT dump file if advised to do so
2023-08-15 17:33:10 +02:00
Marco De Lucia
344f73af23
fix: unnest pht- and dht-related outputs and stats collection in WorkerPostIter and WorkerPostSim
2023-08-11 14:44:26 +02:00
Marco De Lucia
fef482f5e0
fix: rounded_key instead of roundedKey
2023-08-11 11:04:11 +02:00
Max Lübke
d4f525ccbf
ci: add expiration date for build artifacts
2023-08-11 10:26:40 +02:00
Max Lübke
2d22daa820
ci: always run build and test stage on new commits
2023-08-11 10:19:02 +02:00
Max Luebke
f81fdfa3b4
fix: remove reworked part in output
2023-08-10 14:17:17 +02:00
Max Luebke
ff8da12193
feat: enable interpolation without DHT lookup
2023-08-10 14:15:26 +02:00
Max Luebke
e9969eeb66
fix: add includes to macros
2023-08-09 14:16:09 +02:00
Marco De Lucia
5ce26df771
MDL: replaced all cout/cerr with macros MSG, ERRMSG...
2023-08-09 12:22:03 +02:00
Marco De Lucia
939052968b
MDL: added include/poet/Macros.hpp
2023-08-09 12:20:55 +02:00
Marco De Lucia
bb6ebf6ada
MDL: add stdout message from initialisation in SimParams
2023-08-09 09:50:09 +02:00
Max Luebke
a69ee81325
fix: pass copy of map to DHT parsing
2023-08-04 13:40:20 +02:00
