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Author SHA1 Message Date
Max Lübke
feb8efa73d Refactor grid initialization and update member access in InitialList 2024-03-19 12:32:16 +00:00
Max Lübke
ab7efbc3a8 Update getModuleSizes function to use new API 2024-03-19 09:48:31 +00:00
Max Lübke
9fdda31151 Refactor pqc_to_grid function to use matrix instead of data.table 2024-03-19 09:47:40 +00:00
Max Luebke
2b74fca740 Save latest changes, boundaries still missing or incomplete 2024-03-19 08:12:20 +00:00
Max Luebke
371eb1367a Add modify_module_sizes function and modify module_sizes in InitialList class 2024-03-13 23:50:13 +01:00
Max Luebke
8f698149da Update function name to replaceRawKeywordIDs in GridInit.cpp 2024-03-13 22:06:07 +01:00
Max Luebke
d012936c6d Update RAW Keywords to always refer to ID 1 2024-03-13 22:05:06 +01:00
Max Luebke
9b144f8ec5 Update CMakeLists.txt and add new files for barite_het simulation 2024-03-13 17:11:53 +01:00
Max Luebke
3d203f307f Remove installation of poet binary 2024-03-13 16:58:37 +01:00
Max Luebke
a1e771f7ed Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp 2024-03-13 16:57:44 +01:00
Max Lübke
c050613614 Add apps directory and initializer application 2024-03-07 13:54:53 +00:00
Max Lübke
2f72ebc73d Fix path in GitLab CI script 2024-03-07 13:41:50 +00:00
Max Lübke
d86e7fa8f7 Update dependencies in ci.Dockerfile 2024-03-07 13:41:34 +00:00
Max Lübke
6e055a52e1 Fix build of pages 2024-03-07 13:39:27 +00:00
Max Lübke
49917d2d23 Add Dockerfile for CI environment 2024-03-07 13:39:14 +00:00
Max Lübke
09adce1f8b Merge remote-tracking branch 'origin/main' into v0.x 2024-03-06 13:36:36 +00:00
Max Lübke
251f760564 Update doxygen configuration 2024-03-06 12:25:30 +00:00
Max Lübke
4887699b35 Add Dockerfile and devcontainer.json for VS Code development environment 2024-03-06 12:25:17 +00:00
Max Lübke
4b7700cb2a Remove R_lib subdirectory from CMakeLists.txt 2024-03-06 12:24:07 +00:00
Max Lübke
62c0a74048 Merge branch 'include_scripts' into 'v0.x' 
Add R library file as string to executable

See merge request naaice/poet!21
 2024-03-06 12:34:49 +01:00
Max Lübke
10c31e3a9a Add R library file as string to executable 2024-03-06 12:34:02 +01:00
Max Lübke
13e79382fe Merge branch 'restructure' into 'v0.x' 
Refactor build process

See merge request naaice/poet!20
 2024-03-06 12:03:49 +01:00
Max Lübke
2bfee6c99f Remove unused CMakeLists.txt file for SurrogateModels 2024-03-06 12:03:02 +01:00
Max Lübke
f7323c05c3 Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt 2024-03-06 12:01:19 +01:00
Max Lübke
3613d52d1e Update CMakeLists.txt and include headers in test files 2024-03-06 11:59:18 +01:00
Max Lübke
1250dc59d9 Add Macros.hpp and RInsidePOET.hpp*** 
***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
 2024-03-06 11:59:12 +01:00
Max Lübke
52fdbb8d2f Remove unused 'app' directory 2024-03-06 11:32:45 +01:00
Max Lübke
fb8a8d24b6 Refactor build process 
Now include/app paths are combined in the src dir.
 2024-03-06 11:26:52 +01:00
Max Lübke
3d9f8d84cd Fix broken Dolo large benchmark 
Update surfex to a larger grid size
 2024-03-01 12:57:42 +01:00
Max Lübke
6c4df5f375 Update initial and boundary conditions for dolo large model 2024-02-26 12:34:42 +01:00
Max Lübke
b5eb0e6592 Add .vscode to .gitignore 2024-02-22 09:47:05 +01:00
Marco De Lucia
bb7e684d8f fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R 2024-01-12 12:50:54 +01:00
Max Lübke
de3b2db455 Update file dolo_interp_long.R 2023-11-21 16:25:50 +01:00
Max Lübke
87c32156b9 docs: improve main SVG 2023-11-01 11:01:38 +01:00
Max Lübke
ffce08f406 feat: instead of always storing exact input and output make it dependent 
on the usage of interpolation
 2023-11-01 10:55:46 +01:00
Max Lübke
a9a14cf333 feat: make storage of input values in DHT optional 2023-09-08 22:43:52 +02:00
Max Lübke
c4995f86c0 fix: output DHT size in megabyte 2023-09-07 09:12:44 +02:00
Marco De Lucia
4ddf243520 docs: README for surfex bench 2023-08-26 18:39:50 +02:00
Marco De Lucia
5a38e5df0f fix: stdout time for diffusion step. Fixes in READMEs 2023-08-26 17:34:21 +02:00
Marco De Lucia
efd01ea390 docs: readmes for dolo & barite 2023-08-26 17:22:22 +02:00
Marco De Lucia
d2039354eb ICs, BCs, fixes 2023-08-26 14:24:26 +02:00
Marco De Lucia
8b8444edd4 refs, eqs and text 2023-08-26 13:55:06 +02:00
Marco De Lucia
5b9bc2c70c more eqs and text 2023-08-26 13:41:00 +02:00
Marco De Lucia
ac9dc30eca eqs and text 2023-08-26 13:10:17 +02:00
Marco De Lucia
451c37aac3 some fixes 2023-08-26 12:50:12 +02:00
Marco De Lucia
b8096411f6 Revert "Update file README.org" 
This reverts commit 462cf2f08e7426661b419a2f52bb48287f847d94
 2023-08-26 12:49:31 +02:00
Marco De Lucia
79ef735be7 Update file README.org 2023-08-26 12:32:47 +02:00
Marco De Lucia
a5e68fbf34 doc: testing src_latex in README.org 2023-08-26 12:29:31 +02:00
Marco De Lucia
7269b6fc81 doc: added bench/barite/README.org 2023-08-26 12:26:52 +02:00
Marco De Lucia
b961c26a85 testing staged changes 2023-08-17 14:29:09 +02:00