471 Commits

Author SHA1 Message Date
Marco De Lucia
58175dd8e2 Merge branch 'mdl/defaultstorelease' into 'main'
DEFAULT_BUILD_TYPE set to Release

See merge request naaice/poet!60
2025-12-06 22:37:17 +01:00
Marco De Lucia
c8a779ca58 set DEFAULT_BUILD_TYPE to "Release"; defined properties so one cycles through when using ccmake 2025-11-14 19:19:07 +01:00
Marco De Lucia
14c08460ad Merge branch 'mdl/readme' into 'main'
Mdl/readme

Closes #22

See merge request naaice/poet!59
2025-11-14 15:31:46 +01:00
Marco De Lucia
0dc9352459 Updated README - domain change, litephreeqc 2025-11-14 15:28:25 +01:00
Max Lübke
9cd487cc15 Merge branch 'mdl/litephreeqc' into 'main'
Chore: New URL and name for litephreeqc in .gitmodules

See merge request naaice/poet!58
2025-11-13 16:45:53 +01:00
Max Lübke
04ac4b8b7b ci(gitlab): allow mirror push job to fail 2025-11-13 16:39:06 +01:00
Max Lübke
2c813b9e24 build: set path for submodule 2025-11-13 16:35:57 +01:00
Max Lübke
1b55f5e651 chore: use git mv to set new path for litephreeqc 2025-11-13 16:31:47 +01:00
Max Lübke
746ae15645 chore: rollback submodule path 2025-11-13 16:30:55 +01:00
Marco De Lucia
9066ae942b Chore: New URL and name for litephreeqc in .gitmodules 2025-11-13 16:22:21 +01:00
Marco De Lucia
22f5f6f21d chore: add CITATIONS.cff 0.4 2025-10-24 11:29:57 +02:00
Marco De Lucia
cbe0712766 Merge branch '19-cmake-requirements-missmatch-with-tug' into 'main'
Resolve "CMake requirements missmatch with TUG."

Closes #19

See merge request naaice/poet!57
2025-10-24 10:33:41 +02:00
Max Lübke
21c606f5b5 docs(license): add SPDX identifier to source files 2025-10-24 09:41:25 +02:00
Max Lübke
c8bedaac28 refactor(diffusion): integrate tug::Diffusion solver 2025-10-24 09:41:03 +02:00
Max Lübke
5f2b0cc942 build(deps): update cli11 to v2.5.0 2025-10-24 09:38:26 +02:00
Max Lübke
0d307c790f build(deps): update minimum CMake to 3.20 and tug submodule 2025-10-24 09:38:05 +02:00
Max Lübke
fb1f053055 Merge branch 'ml/mirror-to-github' into 'main'
ci(github): add job to push to GitHub remote

See merge request naaice/poet!56
2025-10-15 09:58:35 +02:00
Max Lübke
86a683f07c ci(github): add job to push to GitHub remote 2025-10-15 09:57:05 +02:00
Max Lübke
490a28903b Merge branch 'chore' into 'main'
chore: update iphreeqc submodule

See merge request naaice/poet!54
2025-09-23 12:21:14 +02:00
Max Lübke
0317ddbf8f chore: update iphreeqc submodule 2025-09-23 12:19:45 +02:00
Max Lübke
92d6044e97 Merge branch 'ml/add-build-type-to-readme' into 'main'
Add CMake Build Type to Readme

See merge request naaice/poet!53
2025-05-20 14:29:00 +02:00
Max Lübke
77ccd11220 Add CMake Build Type to Readme 2025-05-20 14:28:45 +02:00
Marco De Lucia
ccd54aaa09 Merge branch '17-new-barite-benchmarks-for-fgcs-journal' into 'main'
Resolve "New barite benchmarks for FGCS journal"

Closes #17

See merge request naaice/poet!44
2025-05-19 12:50:30 +02:00
Max Lübke
66d908b548 fix: Correct boolean conversion in DHT hook call 2025-03-12 10:35:23 +01:00
Hannes Martin Signer
a4bf2a13f9 Merge branch 'ml/add-tug-solver-option' into 'main'
Add option to toggle tug numerical solver approach

See merge request naaice/poet!50
2025-01-29 16:17:52 +01:00
Max Luebke
85e93955bc Add option to toggle tug numerical solver approach 2025-01-29 15:53:32 +01:00
Max Lübke
5a7779e8de refactor: clean up CMakeLists.txt by removing unnecessary target_sources indentation 2025-01-09 12:18:13 +01:00
Max Lübke
bcab85c331 feat: add index tracking and flushing functionality to DHT 2025-01-09 12:18:05 +01:00
Max Lübke
dffbec674c Merge branch '17-new-barite-benchmarks-for-fgcs-journal' of git.gfz-potsdam.de:naaice/poet into 17-new-barite-benchmarks-for-fgcs-journal 2024-12-20 10:12:51 +01:00
Max Lübke
2df3f9f34a [wip] add input validation for work_package in DHT_Wrapper and InterpolationModule 2024-12-20 10:12:19 +01:00
Max Lübke
cefea926cf fix: update grid dimensions and refine species definitions in barite_fgcs_2.R 2024-12-20 10:08:07 +01:00
Marco De Lucia
b93cdeed83 Fancier benchmark for fgcs paper 2024-12-20 10:08:07 +01:00
Max Lübke
8b7e3e983e Merge branch 'hotfix-qs-option' into 'main'
fix: remove duplicate flag for saving output as .qs file in parseInitValues

See merge request naaice/poet!49
2024-12-20 10:07:21 +01:00
Max Lübke
a14095622f fix: remove duplicate flag for saving output as .qs file in parseInitValues 2024-12-20 10:05:49 +01:00
Marco De Lucia
554d501ed0 Fancier benchmark for fgcs paper 2024-12-20 09:24:19 +01:00
Max Lübke
ab01dbc0a7 Merge branch 'ml/fix-interpolation' into 'main'
Fix Interpolation and add optional features to POET benchmark description

See merge request naaice/poet!48
2024-12-20 09:23:44 +01:00
Max Lübke
eb384b48c0 Merge branch 'main' into 'ml/fix-interpolation'
# Conflicts:
#   src/initializer.cpp
#   src/poet.cpp
#   src/poet.hpp.in
2024-12-20 09:22:55 +01:00
Max Lübke
e34c2ef464 fix: initialize default values for RuntimeParameters in poet.hpp.in 2024-12-20 09:21:18 +01:00
Max Lübke
d5a70a20bb fix: update dht_species values for barite and celestite in benchmark scripts 2024-12-20 09:21:18 +01:00
Max Lübke
a718c3efaf Revert "feat: make output of H(0) and O(0) optional"
This reverts commit bdb5ce944fd001cb36c8369d8c792f2f4a54c7be.
2024-12-20 09:21:18 +01:00
Max Lübke
5664153cf9 fix: handle zero distance case in inverseDistanceWeighting to prevent division by zero 2024-12-20 09:21:18 +01:00
Max Lübke
6ab404eefd feat: add with_h0_o0 and with_redox parameters to ChemistryModule and related classes 2024-12-20 09:21:18 +01:00
Max Luebke
e5588a2ee9 feat: add support for redox in PhreeqcMatrix initialization 2024-12-20 09:21:18 +01:00
Max Lübke
6fb226887e feat: enhance LookupKey with const isnan method and comparison operator 2024-12-20 09:21:18 +01:00
Max Lübke
521937a527 refactor: streamline WorkPackage constructor and improve DHT_Wrapper::fillDHT logic 2024-12-20 09:21:17 +01:00
Max Luebke
d661da13bd feat: add dht_snaps and dht_out_dir parameters to ChemistryModule and main function 2024-12-20 09:21:17 +01:00
Max Luebke
06728bc28b fix: initialize includeH0O0 to false in command line options 2024-12-20 09:21:17 +01:00
Max Luebke
c5b0ae201c feat: make output of H(0) and O(0) optional 2024-12-20 09:21:17 +01:00
Max Lübke
ac96f24a33 feat: add has_het_ids parameter to DHT initialization and related functions 2024-12-20 09:21:17 +01:00
Max Lübke
9b9fd898b7 fix: use const reference for to_calc in InterpolationModule to improve performance 2024-12-20 09:21:17 +01:00