459 Commits

Author SHA1 Message Date
Max Lübke
dcd07e4e92 doc: Update R package installation process for AI surrogate 2024-08-29 14:25:37 +02:00
Max Lübke
29808025d8 Merge branch 'ml/fix-dht' into 'main'
fix: Error during DHT usage

See merge request naaice/poet!32
2024-08-29 08:47:45 +02:00
Max Lübke
45bd7acbe1 Update subproject commit reference 2024-08-29 08:35:17 +02:00
Max Lübke
cc943371a1 fix: distribute species names across all processes 2024-08-29 08:35:11 +02:00
hans
a65f4992ae Fix: merge issues 2024-06-05 16:43:33 +02:00
hans
31da6843b4 Merge branch 'ai-surrogate-v03-temp' into ai_surrogate_merge 2024-06-05 16:02:30 +02:00
hans
742ac96406 Merge branch 'origin/ai-surrogate-v03-temp-mdl' into ai_surrogate_merge 2024-06-05 15:59:00 +02:00
hans
dcfe2c58db fix: reserve vs resize in Worker 2024-06-05 15:54:19 +02:00
hans
562026a12a fix: wp_start_index in Worker 2024-05-31 11:45:19 +02:00
hans
bea250cc88 fix: wp_start_index in Worker 2024-05-31 11:26:50 +02:00
Marco De Lucia
b75b37e0f8 MDL: AI model seems correctly updated/stored 2024-05-30 13:37:28 +02:00
hans
25df2df5b3 docs: updated graphic 2024-05-30 13:30:43 +02:00
hans
7201506e73 docs: updated graphic 2024-05-30 13:30:10 +02:00
hans
cafefe2ba5 docs: updated graphic 2024-05-30 13:28:48 +02:00
Hans Straile
545a269c75 Update 0230720_Scheme_POET_en.svg 2024-05-30 13:25:15 +02:00
hans
f8864d991a docs: updated docs for v03 2024-05-30 13:20:50 +02:00
Marco De Lucia
ce4ab918e9 MDL: added barite_50ai bench 2024-05-30 11:37:31 +02:00
Marco De Lucia
69ebc516ba MDL: some fixes and some more output to make AI run 2024-05-30 11:32:08 +02:00
hans
53b9479cad feat: Add AI Surrogate functions to V.03 2024-05-27 15:22:29 +02:00
hans
95cb95998e feat: Add AI Surrogate functions to V.03 2024-05-27 09:09:01 +02:00
Max Lübke
f5f2cb4b9c Merge branch 'ml/fix-chemistry' into 'main'
Fix chemistry

See merge request naaice/poet!30
v0.3
2024-05-07 12:30:13 +02:00
Max Lübke
e79881d9c5 chore: Update subproject commit in ext/iphreeqc 2024-05-07 09:52:31 +00:00
Max Lübke
44775ea018 fix: Correct logic for updating output values in WorkerRunWorkPackage 2024-05-07 08:34:18 +00:00
Max Lübke
4da95e385b Merge branch 'ml/build' into 'main'
Update CMakeLists.txt to conditionally add the bench subdirectory based on the...

See merge request naaice/poet!29
2024-05-06 13:27:27 +02:00
Max Lübke
d399ca8190 Update CMakeLists.txt to conditionally add the bench subdirectory based on the POET_PREPROCESS_BENCHS option 2024-05-06 11:26:13 +00:00
Max Lübke
22458b41f4 Merge branch 'ml/ci' into 'main'
Refactor CI/CD pipeline

See merge request naaice/poet!28
2024-05-06 13:17:40 +02:00
Max Lübke
aec3d8f63a Refactor CI/CD pipeline 2024-05-06 13:17:39 +02:00
Max Lübke
74bafca4b8 Merge branch 'ml/surfex' into 'main'
Enable Surfex/Exchange reactants using IPhreeqc/POET API

See merge request naaice/poet!27
2024-05-06 12:11:50 +02:00
Max Lübke
2e265443b9 Update Readme 2024-05-06 10:09:28 +00:00
Max Lübke
20a0c453b0 Add EGU debug model 2024-05-06 10:09:28 +00:00
Max Lübke
480dd146f4 BREAKING CHANGE: Enable Surface/Exchange using new API of PhreeqcEngine 2024-05-06 10:01:57 +00:00
Max Luebke
d7c23c6b3c Fix build process to only produce benchmarks when needed 2024-04-15 09:10:11 +00:00
Max Lübke
e11caba0b3 Fix grid size assignment in GridInit.cpp 2024-04-12 12:35:43 +00:00
Max Lübke
6d36dd7a2e Refactor R_lib/kin_r_library.R to use setup$maxiter instead of iter for calculating max digits 2024-04-10 10:24:00 +00:00
Max Lübke
7ee438b667 Remove doctest submodule 2024-04-10 10:24:00 +00:00
Max Lübke
f4661a591c Fix diffusion and chem field update order in RunMasterLoop 2024-04-10 10:24:00 +00:00
Max Lübke
103b26a097 Refactor process to output as DataFrames 2024-04-10 10:24:00 +00:00
Max Lübke
f2c5caf307 Refactor R package dependencies in Dockerfile 2024-04-09 08:09:47 +00:00
Max Luebke
e27ce205fb Add minimal flag to importList function in InitialList 2024-04-08 20:47:38 +00:00
Max Luebke
8856825c23 Refactor Field.cpp to use Rcpp DataFrame for conversion to SEXP 2024-04-08 20:31:36 +00:00
Max Luebke
c42b335aae Refactor build file generation 2024-04-08 20:31:36 +00:00
Max Luebke
a2f04836a4 Refactor benchmark files to current POET input expectations 2024-04-08 20:31:36 +00:00
Max Luebke
7febb31bf9 Refactor command line argument handling and improve script sourcing in initializer.cpp 2024-04-08 12:49:58 +00:00
Max Luebke
c9ff062514 Refactor initializer.cpp to handle command line arguments and improve script sourcing 2024-04-08 12:02:47 +00:00
Max Luebke
62e734e0d5 Refactor code for grid creation and result storage 2024-04-08 11:27:06 +00:00
Max Luebke
3ea3412516 Fix inner_boundaries handling in DiffusionModule and InitialList 2024-04-08 10:32:00 +00:00
Max Luebke
8d64c83123 Update minimum required CMake version to 3.14 2024-04-08 10:31:47 +00:00
Max Luebke
fa916cc66e Refactor code according to static analyzers 2024-04-08 09:19:48 +00:00
Max Luebke
e6092c9166 Add dolo_inner benchmark 2024-04-05 08:34:41 +00:00
Max Luebke
a24b4f5f51 Move old benchmark files into old subdir
Move new benchmark files from `het` folder
2024-04-05 08:33:26 +00:00