Max Luebke
eaf4b2b712
Update RAW Keywords to always refer to ID 1
2024-03-13 22:05:06 +01:00
Max Luebke
31d09ecc27
Update CMakeLists.txt and add new files for barite_het simulation
2024-03-13 17:11:53 +01:00
Max Luebke
5357bdf975
Remove installation of poet binary
2024-03-13 16:58:37 +01:00
Max Luebke
bcabe5bcc4
Add iphreeqc and init_r_lib submodules, and make necessary changes to CMakeLists.txt and src/initializer.cpp
2024-03-13 16:57:44 +01:00
Max Lübke
24b0607e94
Add apps directory and initializer application
2024-03-07 13:54:53 +00:00
Max Lübke
bec496e0fb
Merge branch 'v0.x' into 'main'
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Fix path in GitLab CI
See merge request naaice/poet!25
2024-03-07 14:43:03 +01:00
Max Lübke
a6063776ea
Fix path in GitLab CI script
2024-03-07 13:41:50 +00:00
Max Lübke
29018afa13
Update dependencies in ci.Dockerfile
2024-03-07 13:41:34 +00:00
Max Lübke
575739c4bd
Merge branch 'v0.x' into 'main'
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CI fixes
See merge request naaice/poet!24
2024-03-07 14:40:15 +01:00
Max Lübke
5c44146633
Fix build of pages
2024-03-07 13:39:27 +00:00
Max Lübke
912c083353
Add Dockerfile for CI environment
2024-03-07 13:39:14 +00:00
Max Lübke
606dc0ce1f
Merge branch 'v0.x' into 'main'
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Preparation for EuroPar24 contribution
See merge request naaice/poet!23
2024-03-06 14:37:39 +01:00
Max Lübke
e6e159517d
Merge remote-tracking branch 'origin/main' into v0.x
2024-03-06 13:36:36 +00:00
Max Lübke
1b0d2c92fe
Update doxygen configuration
2024-03-06 12:25:30 +00:00
Max Lübke
17bc121d7c
Add Dockerfile and devcontainer.json for VS Code development environment
2024-03-06 12:25:17 +00:00
Max Lübke
e74805370e
Remove R_lib subdirectory from CMakeLists.txt
2024-03-06 12:24:07 +00:00
Max Lübke
408aac4588
Merge branch 'include_scripts' into 'v0.x'
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Add R library file as string to executable
See merge request naaice/poet!21
2024-03-06 12:34:49 +01:00
Max Lübke
06c63a125b
Add R library file as string to executable
2024-03-06 12:34:02 +01:00
Max Lübke
bfe4d0d751
Merge branch 'restructure' into 'v0.x'
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Refactor build process
See merge request naaice/poet!20
2024-03-06 12:03:49 +01:00
Max Lübke
f1f56494f9
Remove unused CMakeLists.txt file for SurrogateModels
2024-03-06 12:03:02 +01:00
Max Lübke
58435a94d6
Add OMPI_SKIP_MPICXX to target_compile_definitions in CMakeLists.txt
2024-03-06 12:01:19 +01:00
Max Lübke
5ddc239499
Update CMakeLists.txt and include headers in test files
2024-03-06 11:59:18 +01:00
Max Lübke
a17f40d31c
Add Macros.hpp and RInsidePOET.hpp***
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***Add RInsidePOET class and RHookFunction template***
***Update include paths in SimParams.hpp***
***Update CMakeLists.txt to link poetlib***
***Update DHT_Wrapper.hpp include path***
***Update DiffusionModule.cpp include path***
***Update poet.cpp include paths***
***Add poet.hpp.in
2024-03-06 11:59:12 +01:00
Max Lübke
547156b017
Remove unused 'app' directory
2024-03-06 11:32:45 +01:00
Max Lübke
599088d964
Refactor build process
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Now include/app paths are combined in the src dir.
2024-03-06 11:26:52 +01:00
Max Lübke
42e740beb9
Fix broken Dolo large benchmark
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Update surfex to a larger grid size
2024-03-01 12:57:42 +01:00
Max Lübke
19429516a9
Update initial and boundary conditions for dolo large model
2024-02-26 12:34:42 +01:00
Max Lübke
c685ff536e
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
3f89321e71
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
Max Lübke
2204f0f793
Update file dolo_interp_long.R
2023-11-21 16:25:50 +01:00
Max Lübke
d0e3a5fbe0
docs: improve main SVG
2023-11-01 11:01:38 +01:00
Max Lübke
6bd37ccb5e
feat: instead of always storing exact input and output make it dependent
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on the usage of interpolation
2023-11-01 10:55:46 +01:00
Max Lübke
ba65f72984
feat: make storage of input values in DHT optional
2023-09-08 22:43:52 +02:00
Max Lübke
1b553205cd
fix: output DHT size in megabyte
2023-09-07 09:12:44 +02:00
Marco De Lucia
30e510f8ff
docs: README for surfex bench
2023-08-26 18:39:50 +02:00
Marco De Lucia
9c68f9d979
fix: stdout time for diffusion step. Fixes in READMEs
2023-08-26 17:34:21 +02:00
Marco De Lucia
d32141bed2
docs: readmes for dolo & barite
2023-08-26 17:22:22 +02:00
Marco De Lucia
ce31648c07
ICs, BCs, fixes
2023-08-26 14:24:26 +02:00
Marco De Lucia
b178dbb082
refs, eqs and text
2023-08-26 13:55:06 +02:00
Marco De Lucia
8e9a31a29e
more eqs and text
2023-08-26 13:41:00 +02:00
Marco De Lucia
7b1b247253
eqs and text
2023-08-26 13:10:17 +02:00
Marco De Lucia
273844d073
some fixes
2023-08-26 12:50:12 +02:00
Marco De Lucia
a9a4fe0d0e
Revert "Update file README.org"
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This reverts commit 462cf2f08e7426661b419a2f52bb48287f847d94
2023-08-26 12:49:31 +02:00
Marco De Lucia
462cf2f08e
Update file README.org
2023-08-26 12:32:47 +02:00
Marco De Lucia
a57301d641
doc: testing src_latex in README.org
2023-08-26 12:29:31 +02:00
Marco De Lucia
5094233e12
doc: added bench/barite/README.org
2023-08-26 12:26:52 +02:00
Marco De Lucia
93088f9bf5
testing staged changes
2023-08-17 14:29:09 +02:00
Max Luebke
c5a991c4c9
feat: implement SEXP export of Field structure
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feat: implement NamedVector based on Rcpp::NumericVector
feat: remove hard coded checks and substitute by R hook functions,
defined in the input script
refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors
test: add tests for NamedVector
test: extend tests for Field
2023-08-17 10:51:54 +02:00
Max Luebke
3897cc6bf8
chore: add .cache to gitignore
2023-08-16 12:21:19 +02:00
Max Luebke
c4de48b17e
fix: only write PHT dump file if advised to do so
2023-08-15 17:33:10 +02:00
