Max Lübke
c685ff536e
Add .vscode to .gitignore
2024-02-22 09:47:05 +01:00
Marco De Lucia
3f89321e71
fix: updated bench/barite/{barite.R, barite_interp_eval.R}, added bench/barite/barite_200.R
2024-01-12 12:50:54 +01:00
Max Lübke
2204f0f793
Update file dolo_interp_long.R
2023-11-21 16:25:50 +01:00
Max Lübke
d0e3a5fbe0
docs: improve main SVG
2023-11-01 11:01:38 +01:00
Max Lübke
6bd37ccb5e
feat: instead of always storing exact input and output make it dependent
...
on the usage of interpolation
2023-11-01 10:55:46 +01:00
Max Lübke
ba65f72984
feat: make storage of input values in DHT optional
2023-09-08 22:43:52 +02:00
Max Lübke
1b553205cd
fix: output DHT size in megabyte
2023-09-07 09:12:44 +02:00
Marco De Lucia
30e510f8ff
docs: README for surfex bench
2023-08-26 18:39:50 +02:00
Marco De Lucia
9c68f9d979
fix: stdout time for diffusion step. Fixes in READMEs
2023-08-26 17:34:21 +02:00
Marco De Lucia
d32141bed2
docs: readmes for dolo & barite
2023-08-26 17:22:22 +02:00
Marco De Lucia
ce31648c07
ICs, BCs, fixes
2023-08-26 14:24:26 +02:00
Marco De Lucia
b178dbb082
refs, eqs and text
2023-08-26 13:55:06 +02:00
Marco De Lucia
8e9a31a29e
more eqs and text
2023-08-26 13:41:00 +02:00
Marco De Lucia
7b1b247253
eqs and text
2023-08-26 13:10:17 +02:00
Marco De Lucia
273844d073
some fixes
2023-08-26 12:50:12 +02:00
Marco De Lucia
a9a4fe0d0e
Revert "Update file README.org"
...
This reverts commit 462cf2f08e7426661b419a2f52bb48287f847d94
2023-08-26 12:49:31 +02:00
Marco De Lucia
462cf2f08e
Update file README.org
2023-08-26 12:32:47 +02:00
Marco De Lucia
a57301d641
doc: testing src_latex in README.org
2023-08-26 12:29:31 +02:00
Marco De Lucia
5094233e12
doc: added bench/barite/README.org
2023-08-26 12:26:52 +02:00
Marco De Lucia
93088f9bf5
testing staged changes
2023-08-17 14:29:09 +02:00
Max Luebke
c5a991c4c9
feat: implement SEXP export of Field structure
...
feat: implement NamedVector based on Rcpp::NumericVector
feat: remove hard coded checks and substitute by R hook functions,
defined in the input script
refactor: modify API of DHT_Wrapper/InterpolationModule to expect a work
package structure, where input/output values are stored as 2D vectors
test: add tests for NamedVector
test: extend tests for Field
2023-08-17 10:51:54 +02:00
Max Luebke
3897cc6bf8
chore: add .cache to gitignore
2023-08-16 12:21:19 +02:00
Max Luebke
c4de48b17e
fix: only write PHT dump file if advised to do so
2023-08-15 17:33:10 +02:00
Marco De Lucia
6f20cb897b
fix: unnest pht- and dht-related outputs and stats collection in WorkerPostIter and WorkerPostSim
2023-08-11 14:44:26 +02:00
Marco De Lucia
7a10217751
fix: rounded_key instead of roundedKey
2023-08-11 11:04:11 +02:00
Max Lübke
4c3752fd49
ci: add expiration date for build artifacts
2023-08-11 10:26:40 +02:00
Max Lübke
6e687acf45
ci: always run build and test stage on new commits
2023-08-11 10:19:02 +02:00
Max Luebke
e82544a25d
fix: remove reworked part in output
2023-08-10 14:17:17 +02:00
Max Luebke
164406ff25
feat: enable interpolation without DHT lookup
2023-08-10 14:15:26 +02:00
Max Luebke
20db291bae
fix: add includes to macros
2023-08-09 14:16:09 +02:00
Marco De Lucia
8707da42c3
MDL: replaced all cout/cerr with macros MSG, ERRMSG...
2023-08-09 12:22:03 +02:00
Marco De Lucia
b08697f9d4
MDL: added include/poet/Macros.hpp
2023-08-09 12:20:55 +02:00
Marco De Lucia
4181e189a1
MDL: add stdout message from initialisation in SimParams
2023-08-09 09:50:09 +02:00
Max Luebke
88662d6b2e
fix: pass copy of map to DHT parsing
2023-08-04 13:40:20 +02:00
Max Luebke
52d8b164e6
fix: use output index also for weighting
2023-08-03 21:23:50 +02:00
Max Luebke
f7d8f8751a
fix: apply weights to output values (rates) instead of input values
2023-08-03 17:22:59 +02:00
Max Luebke
d5d098d6cd
Merge branch 'ml-doc' into v0.x
2023-08-02 14:00:44 +02:00
Max Luebke
37ee74faaf
perf: remove unused parameters from paramlist and parameter structure
...
doc: update doc to latest changes
data: update benchmarks to latest changes
2023-08-02 14:00:14 +02:00
Max Luebke
4f9e66253f
fix: remove mass balance check
2023-08-01 23:19:16 +02:00
Max Luebke
6d94141c98
chore: update doctest to version 2.4.11
2023-08-01 18:47:56 +02:00
Max Luebke
0c2597d97f
feat: introduce LookupKey and rounding schemes
...
feat: implement data clustering using PHT
feat: implement interpolation
refactor: use named vector for DHT species definition and significant digits
data: remove unusable input scripts
data: move Phreeqc database to benchmark dir
refactor: rename dolomite benchmark directory
refactor: remove DHT prop type from input script
2023-08-01 18:34:50 +02:00
Max Lübke
e62472237d
Merge branch 'rinside-everywhere' into 'main'
...
Implement RInside as singleton pattern
See merge request naaice/poet!16
2023-07-21 12:53:07 +02:00
Max Luebke
d9964e0427
refactor: implement R runtime as singleton pattern
2023-07-21 12:51:56 +02:00
Max Luebke
bae5e96b7a
refactor: remove support for PhreeqcRM support
2023-07-21 12:43:57 +02:00
Max Luebke
2914f59c13
build: build one poet library
2023-07-21 12:35:55 +02:00
Max Lübke
ca922dfa2a
Merge branch 'fix-readme' into 'main'
...
Fixed scheme link in README
See merge request naaice/poet!15
2023-07-20 12:28:37 +02:00
Max Luebke
461418e8b0
doc: Fixed scheme link in README
2023-07-20 12:27:44 +02:00
Max Lübke
25abe63e83
Merge branch '9-toggle-progressbar-with-commandline-option' into 'main'
...
Resolve "Toggle progressbar with commandline option"
Closes #9
See merge request naaice/poet!14
2023-07-12 12:57:49 +02:00
Max Luebke
55dffe9308
feat: toggle progressbar by commandline option
2023-07-12 12:56:36 +02:00
Max Lübke
3cd2320e3f
Merge branch '8-remove-non-standard-bits-headers-from-poet-and-its-submodules' into 'main'
...
Resolve "Remove non-standard `bits/*` headers from POET and its submodules"
Closes #8
See merge request naaice/poet!13
2023-05-22 11:19:06 +02:00
